Detailed information NTG0581138

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L39_RS03965
• Genome accession: NZ_CP077395
• Coordinates: 841708..842583 (+)
• Length: 291 a.a.
• NCBI ID: WP_042077625.1
• Uniprot ID: -
• Organism: Aeromonas sp. FDAARGOS 1409
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 836708..847583

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L39_RS03945 (I6L39_03945)	nadC	836894..837769 (+)	876	WP_216991094.1	carboxylating nicotinate-nucleotide diphosphorylase	-
I6L39_RS03950 (I6L39_03950)	tapA	838079..838561 (+)	483	WP_216991095.1	type IVa pilus major pilin TapA	-
I6L39_RS03955 (I6L39_03955)	pilB	838565..840271 (+)	1707	WP_042077628.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6L39_RS03960 (I6L39_03960)	pilC	840399..841640 (+)	1242	WP_209794187.1	type II secretion system F family protein	Machinery gene
I6L39_RS03965 (I6L39_03965)	pilD	841708..842583 (+)	876	WP_042077625.1	A24 family peptidase	Machinery gene
I6L39_RS03970 (I6L39_03970)	coaE	842602..843216 (+)	615	WP_042077623.1	dephospho-CoA kinase	-
I6L39_RS03975 (I6L39_03975)	zapD	843254..843976 (+)	723	WP_042077622.1	cell division protein ZapD	-
I6L39_RS03980 (I6L39_03980)	yacG	843989..844183 (+)	195	WP_042077620.1	DNA gyrase inhibitor YacG	-
I6L39_RS03985 (I6L39_03985)	mutT	844242..844646 (-)	405	WP_174213873.1	8-oxo-dGTP diphosphatase MutT	-
I6L39_RS03990 (I6L39_03990)	-	844655..845839 (-)	1185	WP_042077618.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32230.54 Da
• Isoelectric Point: 7.7991

>NTDB_id=581138 I6L39_RS03965 WP_042077625.1 841708..842583(+) (pilD) [Aeromonas sp. FDAARGOS 1409]
MAPLIELAQALPWFYLSLVFLFSLMVGSFLNVVIHRLPIMMERDWHAEYTDYFGDHTSPIPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCRAPISARYPLVELLTALLSVAVAATLTPGWGTLAALVLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGFVPLADAVIGAMAGYLVLWALYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQVLPIVLLLSS
LVGAAIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDSITRWYLHVVL

Nucleotide

• Length: 876 bp

>NTDB_id=581138 I6L39_RS03965 WP_042077625.1 841708..842583(+) (pilD) [Aeromonas sp. FDAARGOS 1409]
ATGGCGCCCCTGATCGAACTGGCCCAGGCCCTGCCCTGGTTTTATCTCTCCCTGGTGTTTCTCTTCTCCCTGATGGTGGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGACTGGCACGCCGAATACACCGACTATTTCG
GTGACCATACGTCCCCCATCCCGGCCACTGGACGCTACAACCTGATGGTGCCCCGCTCCCGCTGCCCCCATTGCGACCAC
CCCATAGGTGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAGGGGGCGCTGTCGCAACTGCCGAGCCCCCAT
CTCCGCCCGCTATCCCCTGGTCGAATTGCTCACTGCCCTGCTGTCGGTCGCCGTGGCCGCCACCCTCACTCCCGGCTGGG
GAACCTTGGCGGCCCTCGTGCTGACCTGGGTACTGGTGGCGCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCCTGCCACTGCTGTGGGGCGGTCTGCTGTTCAACCTGTTGGGAGGCTTCGTCCCCCTGGCGGATGCGGTGAT
CGGCGCCATGGCAGGCTATCTGGTGCTCTGGGCCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAGGGCATGGGTT
ATGGCGATTTCAAGCTGCTGGCAGCCCTCGGCGCCTGGCTCGGCTGGCAGGTGCTGCCCATAGTGCTGCTGCTCTCCTCC
CTGGTCGGCGCCGCCATAGGTATCGGCCTCATCCTGCTTCGCAACCACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTA
TCTCGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAGCATCACCCGCTGGTATCTCCATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.282	0.601
pilD	Vibrio campbellii strain DS40M4	56.207	99.656	0.56
pilD	Acinetobacter baumannii D1279779	53.763	95.876	0.515
pilD	Acinetobacter nosocomialis M2	53.763	95.876	0.515
pilD	Neisseria gonorrhoeae MS11	50.545	94.502	0.478