Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6L30_RS09090 Genome accession   NZ_CP077365
Coordinates   1935924..1937150 (+) Length   408 a.a.
NCBI ID   WP_086496648.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1930924..1942150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS09055 (I6L30_09055) rimP 1931596..1932120 (-) 525 WP_216985756.1 ribosome maturation factor RimP -
  I6L30_RS09075 (I6L30_09075) secG 1932758..1933087 (-) 330 WP_174722721.1 preprotein translocase subunit SecG -
  I6L30_RS09080 (I6L30_09080) tpiA 1933100..1933894 (-) 795 WP_216985757.1 triose-phosphate isomerase -
  I6L30_RS09085 (I6L30_09085) pilB 1934184..1935896 (+) 1713 WP_198071715.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6L30_RS09090 (I6L30_09090) pilC 1935924..1937150 (+) 1227 WP_086496648.1 type II secretion system F family protein Machinery gene
  I6L30_RS19035 (I6L30_09095) pilD 1937150..1938010 (+) 861 WP_198071716.1 prepilin peptidase Machinery gene
  I6L30_RS09100 (I6L30_09100) coaE 1938012..1938608 (+) 597 WP_216985758.1 dephospho-CoA kinase -
  I6L30_RS09105 (I6L30_09105) - 1938611..1939519 (-) 909 WP_216985759.1 DMT family transporter -
  I6L30_RS09110 (I6L30_09110) rlmB 1939554..1940303 (-) 750 WP_019456777.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6L30_RS09115 (I6L30_09115) - 1940406..1940732 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  I6L30_RS19060 - 1940809..1941244 (-) 436 Protein_1806 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45099.72 Da        Isoelectric Point: 9.9376

>NTDB_id=580923 I6L30_RS09090 WP_086496648.1 1935924..1937150(+) (pilC) [Acinetobacter seifertii strain FDAARGOS 1400]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPAMVIVVAIVVTIVLMIWVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQSYWFIMIMVIGAIIV
AFIEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFSMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTAMMEPLIMAILGILVGGLVVAMYLP
IFKMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=580923 I6L30_RS09090 WP_086496648.1 1935924..1937150(+) (pilC) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGGGA
ACTTCCAGCCAAAAATATGGCTTTAGCTAAAGTGACCTTACGCAAACAAGGAGTTACTGTTCGAACCATACGTGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTTGATATTACGATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCTCTGGTACAAGGCTTTGAAATTGTAGCTGAAGGCTTAGAAAATCCAGCAATGCGGGAGGT
GGTACTTGGTATTAAAGGTGAAGTTGAAGGTGGCAGCACTTTTGCCTCAGCTTTAAGAAAGTATCCTCAATATTTTGATA
ATTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGTGCACTCGAAACTATGCTAGACCGTGTGGCAATTTACAAA
GAGAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATATCCTGCAATGGTTATTGTAGTAGCCATTGTGGT
AACTATTGTTTTGATGATTTGGGTGGTCCCTGTTTTCCAAGATCTGTTTTCTTCTTTCGGAGCAGAATTACCGGCATTCA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAATCATACTGGTTCATTATGATTATGGTGATTGGTGCAATTATTGTC
GCCTTTATTGAGGCTAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCACTTAAATTACCTATTTTTGG
GGATTTGGTTTATAAAGCAATTATTGCCCGCTATAGTCGTACACTTGCCACTACATTTGCAGCAGGGGTTCCCTTGATTG
ATGCACTTGAGTCAACTGCTGGTGCAACCAACAATGTCATCTATGAACAAGCTGTGATGAAAATTCGTGAAGATGTTGCA
ACAGGTCAACAGCTTCAGTTTTCTATGCGTGTCTCTAACCGTTTCCCTTCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGCGCACTAGACAGTATGCTCGACAAAGTTGCTACCTACTATGAAAATGAAGTGGATAATGCTGTTGATGGCT
TAACTGCAATGATGGAACCTTTAATCATGGCAATTTTAGGGATTCTGGTAGGTGGTCTAGTTGTTGCCATGTATCTTCCA
ATTTTCAAAATGGGTTCAGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

94.608

100

0.946
  pilC Acinetobacter baylyi ADP1

84.559

100

0.846
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

47.87

97.794

0.468
  pilG Neisseria meningitidis 44/76-A

47.87

97.794

0.468
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

39.853

100

0.4
  pilC Thermus thermophilus HB27

37.157

98.284

0.365