Detailed information NTG0580947

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L30_RS19035
• Genome accession: NZ_CP077365
• Coordinates: 1937150..1938010 (+)
• Length: 286 a.a.
• NCBI ID: WP_198071716.1
• Uniprot ID: -
• Organism: Acinetobacter seifertii strain FDAARGOS 1400
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1932150..1943010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L30_RS09075 (I6L30_09075)	secG	1932758..1933087 (-)	330	WP_174722721.1	preprotein translocase subunit SecG	-
I6L30_RS09080 (I6L30_09080)	tpiA	1933100..1933894 (-)	795	WP_216985757.1	triose-phosphate isomerase	-
I6L30_RS09085 (I6L30_09085)	pilB	1934184..1935896 (+)	1713	WP_198071715.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6L30_RS09090 (I6L30_09090)	pilC	1935924..1937150 (+)	1227	WP_086496648.1	type II secretion system F family protein	Machinery gene
I6L30_RS19035 (I6L30_09095)	pilD	1937150..1938010 (+)	861	WP_198071716.1	prepilin peptidase	Machinery gene
I6L30_RS09100 (I6L30_09100)	coaE	1938012..1938608 (+)	597	WP_216985758.1	dephospho-CoA kinase	-
I6L30_RS09105 (I6L30_09105)	-	1938611..1939519 (-)	909	WP_216985759.1	DMT family transporter	-
I6L30_RS09110 (I6L30_09110)	rlmB	1939554..1940303 (-)	750	WP_019456777.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6L30_RS09115 (I6L30_09115)	-	1940406..1940732 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
I6L30_RS19060	-	1940809..1941244 (-)	436	Protein_1806	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32221.72 Da
• Isoelectric Point: 7.5355

>NTDB_id=580947 I6L30_RS19035 WP_198071716.1 1937150..1938010(+) (pilD) [Acinetobacter seifertii strain FDAARGOS 1400]
MQDIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPKCHQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLWGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTAPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=580947 I6L30_RS19035 WP_198071716.1 1937150..1938010(+) (pilD) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGCAAGACATCATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTGTGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGTTACTCA
ATCCTGAACAACCAATCATTGATCATGAAAAGCTAACATTAAGCAAACCTGCTTCATCATGTCCAAAGTGCCATCAACCG
ATTCGTTGGTATCAAAATATCCCAGTCATAAGCTGGTTGATGTTAAGAGGAAAATGTGGTCATTGCCAACATCCGATTAG
CATTCGTTATCCAGCAATTGAACTACTCACCATGTTATGTTCATTGGTGGTGGTTATGGTGTTTGGCCCGACCATACAAA
TGCTTTGGGGACTCGTCCTGACTTGGGTTTTAATTACCCTCACCTTTATAGACTTTGATACACAACTTTTGCCTGATCGC
TTTACCCTGCCTTTAGCAGCACTCGGCTTAGGCATTAACACCTTTAATATTTATACCGCGCCTAACTCAGCTATTTGGGG
TTATTTAATCGGCTTTTTATGCCTATGGATTGTGTATTACTTATTTAAAGTGATTACTGGCAAAGAAGGTATGGGCTACG
GTGACTTTAAATTGCTTGCCGCATTAGGCGCATGGATGGGACCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA
TTAGGTGCAATCATTGGCATCATTTTATTAAAGTTAAGAAATGACAATCAGCCTTTTGCTTTTGGACCATATATTGCCAT
TGCGGGCTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	97.203	100	0.972
pilD	Acinetobacter baumannii D1279779	96.853	100	0.969
pilD	Vibrio cholerae strain A1552	53.114	95.455	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448