Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6L45_RS08780 Genome accession   NZ_CP077363
Coordinates   1834904..1836145 (-) Length   413 a.a.
NCBI ID   WP_216983981.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1415     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829904..1841145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L45_RS08755 (I6L45_08755) mutT 1831894..1832298 (+) 405 WP_216983978.1 8-oxo-dGTP diphosphatase MutT -
  I6L45_RS08760 (I6L45_08760) yacG 1832357..1832551 (-) 195 WP_043762810.1 DNA gyrase inhibitor YacG -
  I6L45_RS08765 (I6L45_08765) zapD 1832562..1833284 (-) 723 WP_167576542.1 cell division protein ZapD -
  I6L45_RS08770 (I6L45_08770) coaE 1833322..1833936 (-) 615 WP_216983979.1 dephospho-CoA kinase -
  I6L45_RS08775 (I6L45_08775) pilD 1833955..1834827 (-) 873 WP_216983980.1 A24 family peptidase Machinery gene
  I6L45_RS08780 (I6L45_08780) pilC 1834904..1836145 (-) 1242 WP_216983981.1 type II secretion system F family protein Machinery gene
  I6L45_RS08785 (I6L45_08785) pilB 1836270..1837976 (-) 1707 WP_216983982.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  I6L45_RS08790 (I6L45_08790) - 1837983..1838411 (-) 429 WP_216983983.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  I6L45_RS08795 (I6L45_08795) nadC 1838719..1839582 (-) 864 WP_216983984.1 carboxylating nicotinate-nucleotide diphosphorylase -
  I6L45_RS08800 (I6L45_08800) - 1839586..1840056 (-) 471 WP_202016401.1 TIGR02281 family clan AA aspartic protease -
  I6L45_RS08805 (I6L45_08805) ampD 1840186..1840758 (+) 573 WP_216983985.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45638.63 Da        Isoelectric Point: 9.9591

>NTDB_id=580896 I6L45_RS08780 WP_216983981.1 1834904..1836145(-) (pilC) [Aeromonas sp. FDAARGOS 1415]
MATLAQRKNAPKKIFSFRWHGFNRKGQKVSGDFQADSINTVKAELRKQGVNVTKVSKQGQGLFSRGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKSAVRELIGQIAADVETGTPLSEALHRHPRYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKNEALKSKIKKAMFYPAMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPAFTRFVIGISRFMQAWWYVIFGGLA
LTIFLYVRAWRKSQKVRDSTDRFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVEALVSSAGASGNYVYRTAIMAIR
NEVMAGMQINVAMRTVDLFPDMVTQMVMIGEESGAIDDMLSKVAGIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=580896 I6L45_RS08780 WP_216983981.1 1834904..1836145(-) (pilC) [Aeromonas sp. FDAARGOS 1415]
ATGGCAACATTAGCTCAAAGAAAGAACGCGCCCAAAAAGATCTTCTCATTCCGCTGGCACGGCTTCAATCGCAAGGGGCA
GAAGGTGTCCGGCGATTTCCAGGCCGACAGCATCAATACCGTCAAGGCCGAACTGCGCAAGCAGGGTGTCAATGTCACCA
AGGTCAGCAAGCAGGGCCAGGGGCTGTTTTCGAGGGGTGGTGCCCGCATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCAGCCGGCGTCCCTCTGGTTCAGAGCCTGCAGATCATCGCCCGTGGCCACGAAAAGTCGGC
GGTGCGCGAACTGATCGGCCAGATCGCCGCAGATGTGGAGACAGGTACCCCGCTGTCGGAGGCGTTGCACCGTCATCCCC
GCTACTTTGACGATCTCTACTGCGATCTCGTCGAGGCGGGCGAGCAGTCCGGCGCTCTGGAGACCATCTACGACCGCATC
GCCACCTACCGCGAGAAGAATGAGGCGCTCAAGTCCAAGATCAAGAAGGCCATGTTCTACCCCGCCATGGTCATTCTGGT
TGCCATCATAGTGACCTCTATATTGCTGTTGTTCGTCATTCCCCAGTTCGAAGAGATCTTCAAGAGCTTCGGAGCCGAGT
TGCCCGCCTTTACCCGGTTCGTCATCGGCATATCCCGGTTCATGCAGGCATGGTGGTACGTCATCTTTGGCGGCCTCGCT
CTGACCATCTTCCTCTATGTGCGGGCCTGGCGAAAATCCCAGAAGGTGCGAGACAGCACCGACAGGTTCATTCTCACCAT
CCCCGTCGTGGGCAACATACTGCACAAGGCCGCCATGGCCCGCTTTGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TTCCTCTGGTGGAGGCGCTGGTTTCGTCGGCCGGCGCCTCGGGCAACTATGTCTACCGCACGGCCATCATGGCCATTCGC
AACGAGGTCATGGCCGGCATGCAGATCAACGTCGCCATGCGCACCGTGGATCTCTTTCCCGACATGGTGACCCAGATGGT
CATGATCGGTGAGGAGTCAGGCGCCATCGACGACATGCTATCCAAAGTCGCGGGCATCTTCGAGCAGGAGGTCGATGACA
TGGTGGACGGGCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTACTGGGGGTGCTGGTCGGCGGCATGGTCGTGGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.566

95.884

0.542
  pilC Legionella pneumophila strain ERS1305867

54.074

98.063

0.53
  pilC Acinetobacter baumannii D1279779

49.875

97.094

0.484
  pilC Acinetobacter baylyi ADP1

49.37

96.126

0.475
  pilC Vibrio cholerae strain A1552

47.25

96.852

0.458
  pilC Vibrio campbellii strain DS40M4

44.472

98.547

0.438
  pilG Neisseria meningitidis 44/76-A

39.801

97.337

0.387
  pilG Neisseria gonorrhoeae MS11

39.801

97.337

0.387
  pilC Thermus thermophilus HB27

39

96.852

0.378