Detailed information NTG0580895

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L45_RS08775
• Genome accession: NZ_CP077363
• Coordinates: 1833955..1834827 (-)
• Length: 290 a.a.
• NCBI ID: WP_216983980.1
• Uniprot ID: -
• Organism: Aeromonas sp. FDAARGOS 1415
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1828955..1839827

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L45_RS08750 (I6L45_08750)	secA	1829085..1831802 (+)	2718	WP_216983977.1	preprotein translocase subunit SecA	-
I6L45_RS08755 (I6L45_08755)	mutT	1831894..1832298 (+)	405	WP_216983978.1	8-oxo-dGTP diphosphatase MutT	-
I6L45_RS08760 (I6L45_08760)	yacG	1832357..1832551 (-)	195	WP_043762810.1	DNA gyrase inhibitor YacG	-
I6L45_RS08765 (I6L45_08765)	zapD	1832562..1833284 (-)	723	WP_167576542.1	cell division protein ZapD	-
I6L45_RS08770 (I6L45_08770)	coaE	1833322..1833936 (-)	615	WP_216983979.1	dephospho-CoA kinase	-
I6L45_RS08775 (I6L45_08775)	pilD	1833955..1834827 (-)	873	WP_216983980.1	A24 family peptidase	Machinery gene
I6L45_RS08780 (I6L45_08780)	pilC	1834904..1836145 (-)	1242	WP_216983981.1	type II secretion system F family protein	Machinery gene
I6L45_RS08785 (I6L45_08785)	pilB	1836270..1837976 (-)	1707	WP_216983982.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6L45_RS08790 (I6L45_08790)	-	1837983..1838411 (-)	429	WP_216983983.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
I6L45_RS08795 (I6L45_08795)	nadC	1838719..1839582 (-)	864	WP_216983984.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32353.63 Da
• Isoelectric Point: 6.3282

>NTDB_id=580895 I6L45_RS08775 WP_216983980.1 1833955..1834827(-) (pilD) [Aeromonas sp. FDAARGOS 1415]
MAPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERDWRAEYRDYFDEDESISANERYNLMVPRSACPHCGHA
ITAIENIPLLSWLWLRGRCRECQAPISARYPLVELLTALLSVAVAATLTPGWGVLAALLLTWSLVALIFIDLDKMLLPDQ
ITLPLLWGGLLFNLLGGFVPLVDAVIGTMAGYLVLWSLYWSFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGITLIALRKHHQGNPIPFGPYLAIAGWIALLWGDKITRWYLELVL

Nucleotide

• Length: 873 bp

>NTDB_id=580895 I6L45_RS08775 WP_216983980.1 1833955..1834827(-) (pilD) [Aeromonas sp. FDAARGOS 1415]
ATGGCGCCTCTTATTGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATCTTTCTCTTCTCCCTCATGGTGGG
CAGTTTCCTCAACGTGGTGATCCACCGCCTGCCCATCATGATGGAGCGGGATTGGCGCGCCGAATATCGCGACTATTTCG
ATGAGGATGAGTCCATCTCCGCCAACGAACGCTACAACCTGATGGTGCCCCGCTCCGCCTGCCCTCACTGCGGCCATGCC
ATCACGGCCATCGAAAACATTCCACTCCTGAGCTGGCTCTGGCTCAGAGGGCGCTGCCGCGAGTGCCAGGCCCCCATTTC
GGCCCGCTATCCTCTGGTCGAACTGCTCACGGCCCTGCTGTCCGTCGCCGTGGCAGCCACTCTGACGCCCGGCTGGGGTG
TGCTGGCAGCCCTCCTGCTCACCTGGAGTCTGGTGGCGCTTATCTTTATCGATCTGGACAAGATGCTGCTGCCCGACCAG
ATCACCCTGCCACTGCTGTGGGGCGGGTTGCTGTTCAACCTGCTGGGTGGTTTCGTTCCCCTGGTTGATGCGGTCATCGG
TACCATGGCAGGTTATCTTGTGCTCTGGAGCCTCTACTGGAGTTTCAAGCTGCTCACCGGCAAGGAGGGCATGGGGTATG
GTGACTTCAAGCTGCTGGCGGCGCTGGGAGCCTGGCTCGGCTGGCAGGCGCTCCCCATCATACTGCTGCTCTCTTCCCTG
GTGGGGGCCGTCATCGGCATCACGCTGATCGCACTGCGTAAACACCATCAGGGCAATCCCATCCCCTTTGGCCCCTATCT
TGCCATCGCAGGCTGGATAGCGCTGTTGTGGGGGGATAAGATCACCCGCTGGTATCTCGAGCTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.404	98.276	0.603
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	52.878	95.862	0.507
pilD	Acinetobacter nosocomialis M2	52.878	95.862	0.507
pilD	Neisseria gonorrhoeae MS11	49.81	90.69	0.452