Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6L27_RS13270 Genome accession   NZ_CP077232
Coordinates   2820394..2821620 (+) Length   408 a.a.
NCBI ID   WP_057104884.1    Uniprot ID   A0A429JZL9
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2815394..2826620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS13235 (I6L27_13240) rimP 2816064..2816588 (-) 525 WP_016144169.1 ribosome maturation factor RimP -
  I6L27_RS13255 (I6L27_13260) secG 2817226..2817555 (-) 330 WP_016142373.1 preprotein translocase subunit SecG -
  I6L27_RS13260 (I6L27_13265) tpiA 2817568..2818362 (-) 795 WP_031947213.1 triose-phosphate isomerase -
  I6L27_RS13265 (I6L27_13270) pilB 2818654..2820366 (+) 1713 WP_216967409.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6L27_RS13270 (I6L27_13275) pilC 2820394..2821620 (+) 1227 WP_057104884.1 type II secretion system F family protein Machinery gene
  I6L27_RS13275 (I6L27_13280) pilD 2821620..2822480 (+) 861 WP_125699029.1 prepilin peptidase Machinery gene
  I6L27_RS13280 (I6L27_13285) coaE 2822482..2823078 (+) 597 WP_062849621.1 dephospho-CoA kinase -
  I6L27_RS13285 (I6L27_13290) - 2823075..2823989 (-) 915 WP_062849622.1 DMT family transporter -
  I6L27_RS13290 (I6L27_13295) rlmB 2824025..2824774 (-) 750 WP_016142380.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6L27_RS13295 (I6L27_13300) - 2824877..2825203 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  I6L27_RS13300 (I6L27_13305) - 2825280..2826590 (-) 1311 WP_216967410.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45054.52 Da        Isoelectric Point: 9.8960

>NTDB_id=580075 I6L27_RS13270 WP_057104884.1 2820394..2821620(+) (pilC) [Acinetobacter pittii strain FDAARGOS 1397]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=580075 I6L27_RS13270 WP_057104884.1 2820394..2821620(+) (pilC) [Acinetobacter pittii strain FDAARGOS 1397]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACGATTTTTACCAGACAACTTGCAACA
ATGATGAAAGCGGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGCCTAGAAAACCCAGCCATGCGCGAGGT
AGTACTTGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACTTTTGCTTCGGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAACAAAAAATCAAAAAAGCTATGAAATATCCCGCAACGGTTATTGTAGTTGCTGTGATTGT
TACCATTATTTTGATGGTTAAAGTCGTGCCAGTGTTTCAAGACCTATTTTCTTCTTTTGGCGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATCATTGTGATTGGAGCAATTATTGCT
GCATTTTTGGAAGCCAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGATAAACTTACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTACAAGGCAATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCAGGTGTTCCACTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAACAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAACGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTTGTAGGTGGGCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A429JZL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.304

100

0.973
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363