Detailed information NTG0580076

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L27_RS13275
• Genome accession: NZ_CP077232
• Coordinates: 2821620..2822480 (+)
• Length: 286 a.a.
• NCBI ID: WP_125699029.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain FDAARGOS 1397
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2816620..2827480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L27_RS13255 (I6L27_13260)	secG	2817226..2817555 (-)	330	WP_016142373.1	preprotein translocase subunit SecG	-
I6L27_RS13260 (I6L27_13265)	tpiA	2817568..2818362 (-)	795	WP_031947213.1	triose-phosphate isomerase	-
I6L27_RS13265 (I6L27_13270)	pilB	2818654..2820366 (+)	1713	WP_216967409.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6L27_RS13270 (I6L27_13275)	pilC	2820394..2821620 (+)	1227	WP_057104884.1	type II secretion system F family protein	Machinery gene
I6L27_RS13275 (I6L27_13280)	pilD	2821620..2822480 (+)	861	WP_125699029.1	prepilin peptidase	Machinery gene
I6L27_RS13280 (I6L27_13285)	coaE	2822482..2823078 (+)	597	WP_062849621.1	dephospho-CoA kinase	-
I6L27_RS13285 (I6L27_13290)	-	2823075..2823989 (-)	915	WP_062849622.1	DMT family transporter	-
I6L27_RS13290 (I6L27_13295)	rlmB	2824025..2824774 (-)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6L27_RS13295 (I6L27_13300)	-	2824877..2825203 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
I6L27_RS13300 (I6L27_13305)	-	2825280..2826590 (-)	1311	WP_216967410.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32262.67 Da
• Isoelectric Point: 6.8118

>NTDB_id=580076 I6L27_RS13275 WP_125699029.1 2821620..2822480(+) (pilD) [Acinetobacter pittii strain FDAARGOS 1397]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPRMMEQDWQQECQILLNPEQPIIEHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLMLRGKCSHCQHPISIRYPAVELLTMLCSLVVVMVFGPTLQMLWGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=580076 I6L27_RS13275 WP_125699029.1 2821620..2822480(+) (pilD) [Acinetobacter pittii strain FDAARGOS 1397]
ATGCAAGAAATTATTGCTTATTTCATTCAGAACTTAACTGCACTTTATATTGCTGTTGCACTATTGAGCCTATGTATTGG
TAGTTTTTTGAATGTAGTAATTTATCGCACCCCAAGAATGATGGAGCAAGATTGGCAGCAGGAATGTCAAATATTGCTTA
ATCCCGAACAACCTATCATTGAGCATGAAAAGCTAACATTAAGTAAGCCTGCTTCATCATGTCCTGAGTGCCATCAACCC
ATCCGTTGGTATCAAAATATTCCTGTCATAAGCTGGTTGATGTTAAGAGGGAAATGCAGTCATTGCCAGCATCCTATTAG
CATTCGTTATCCAGCGGTTGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTCCTGACTTGGGTTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCCGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACATTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTGGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCTTTTGGGCCCTATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Acinetobacter baumannii D1279779	95.105	100	0.951
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.947	91.608	0.43