Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6L28_RS01405 Genome accession   NZ_CP077205
Coordinates   300784..302010 (+) Length   408 a.a.
NCBI ID   WP_216946732.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 295784..307010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS01370 (I6L28_01370) rimP 296454..296978 (-) 525 WP_016144169.1 ribosome maturation factor RimP -
  I6L28_RS01390 (I6L28_01390) secG 297616..297945 (-) 330 WP_016142373.1 preprotein translocase subunit SecG -
  I6L28_RS01395 (I6L28_01395) tpiA 297958..298752 (-) 795 WP_216946730.1 triose-phosphate isomerase -
  I6L28_RS01400 (I6L28_01400) pilB 299044..300756 (+) 1713 WP_216946731.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6L28_RS01405 (I6L28_01405) pilC 300784..302010 (+) 1227 WP_216946732.1 type II secretion system F family protein Machinery gene
  I6L28_RS18165 (I6L28_01410) pilD 302010..302870 (+) 861 WP_016144165.1 prepilin peptidase Machinery gene
  I6L28_RS01415 (I6L28_01415) coaE 302872..303468 (+) 597 WP_216946733.1 dephospho-CoA kinase -
  I6L28_RS01420 (I6L28_01420) - 303465..304379 (-) 915 WP_216946734.1 DMT family transporter -
  I6L28_RS01425 (I6L28_01425) rlmB 304415..305164 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6L28_RS01430 (I6L28_01430) - 305267..305593 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  I6L28_RS01435 (I6L28_01435) - 305670..306980 (-) 1311 WP_081175457.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45068.55 Da        Isoelectric Point: 9.8960

>NTDB_id=579765 I6L28_RS01405 WP_216946732.1 300784..302010(+) (pilC) [Acinetobacter pittii strain FDAARGOS 1398]
MTVKKAQMMPTFAYEGVDRKGLKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=579765 I6L28_RS01405 WP_216946732.1 300784..302010(+) (pilC) [Acinetobacter pittii strain FDAARGOS 1398]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCTTAAAAATTAAGGGAGA
ACTTCCGGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAGAAAGTATCGACACTCGATATCACGATTTTTACCAGACAACTTGCAACA
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGCTTAGAAAACCCAGCCATGCGCGAGGT
AGTACTTGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACTTTTGCTTCGGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAACAGAAAATCAAAAAAGCTATGAAATATCCCGCAACGGTTATTGTAGTTGCTGTGATTGT
TACCATTATTTTGATGGTTAAAGTCGTGCCTGTGTTTCAAGACCTGTTTTCTTCTTTTGGCGCAGATTTACCTGCATTCA
CCCAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATCATTGTGATTGGAGCAATTATTGCT
GCATTTTTGGAAGCCAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGATAAACTTACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTACAAGGCAATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCAGGTGTTCCACTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAACAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAGGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACATCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTTGTAGGTGGGCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363