Detailed information NTG0579804

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L28_RS18165
• Genome accession: NZ_CP077205
• Coordinates: 302010..302870 (+)
• Length: 286 a.a.
• NCBI ID: WP_016144165.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain FDAARGOS 1398
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 297010..307870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L28_RS01390 (I6L28_01390)	secG	297616..297945 (-)	330	WP_016142373.1	preprotein translocase subunit SecG	-
I6L28_RS01395 (I6L28_01395)	tpiA	297958..298752 (-)	795	WP_216946730.1	triose-phosphate isomerase	-
I6L28_RS01400 (I6L28_01400)	pilB	299044..300756 (+)	1713	WP_216946731.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6L28_RS01405 (I6L28_01405)	pilC	300784..302010 (+)	1227	WP_216946732.1	type II secretion system F family protein	Machinery gene
I6L28_RS18165 (I6L28_01410)	pilD	302010..302870 (+)	861	WP_016144165.1	prepilin peptidase	Machinery gene
I6L28_RS01415 (I6L28_01415)	coaE	302872..303468 (+)	597	WP_216946733.1	dephospho-CoA kinase	-
I6L28_RS01420 (I6L28_01420)	-	303465..304379 (-)	915	WP_216946734.1	DMT family transporter	-
I6L28_RS01425 (I6L28_01425)	rlmB	304415..305164 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6L28_RS01430 (I6L28_01430)	-	305267..305593 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
I6L28_RS01435 (I6L28_01435)	-	305670..306980 (-)	1311	WP_081175457.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32280.70 Da
• Isoelectric Point: 6.8118

>NTDB_id=579804 I6L28_RS18165 WP_016144165.1 302010..302870(+) (pilD) [Acinetobacter pittii strain FDAARGOS 1398]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLMLRGKCSHCQHPISIRYPAVELLTMLCSLVVVMVFGPTLQMLWGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=579804 I6L28_RS18165 WP_016144165.1 302010..302870(+) (pilD) [Acinetobacter pittii strain FDAARGOS 1398]
ATGCAAGAAATTATTGCTTATTTCATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTATTGAGCCTATGTATTGG
TAGTTTTTTGAATGTAGTAATTTATCGCACCCCAAGAATGATGGAGCAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCTGAGCAACCCATCATTGAGCATGAAAAACTAACATTAAGTAAACCTGCTTCATCATGTCCAGAGTGCCATCAACCT
ATCCGTTGGTATCAAAATATTCCTGTCATAAGCTGGCTGATGTTAAGAGGGAAATGCAGTCATTGCCAGCATCCTATTAG
CATTCGTTATCCAGCGGTTGAACTACTCACTATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGCCCAACCCTACAAA
TGCTTTGGGGGCTAGTCCTGACTTGGGTTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTGCTCCCCGACCGT
TTTACCTTGCCTTTGGCTGCTCTCGGCTTAGGTATTAATACATTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTGGGCGCGTGGATGGGGCCATTGATGCTGCCTTTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTGCGTAATGATAATCAGCCCTTTGCGTTTGGACCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	96.503	100	0.965
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.947	91.608	0.43