Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HU749_RS25415 Genome accession   NZ_CP077086
Coordinates   5759985..5761202 (+) Length   405 a.a.
NCBI ID   WP_079301776.1    Uniprot ID   -
Organism   Pseudomonas ogarae strain SWRI108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5754985..5766202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU749_RS25395 (HU749_025395) - 5756335..5756625 (+) 291 WP_079301778.1 DUF2845 domain-containing protein -
  HU749_RS25400 (HU749_025400) - 5756953..5757306 (-) 354 WP_003205664.1 BON domain-containing protein -
  HU749_RS25405 (HU749_025405) - 5757626..5758057 (-) 432 WP_079301777.1 pilin -
  HU749_RS25410 (HU749_025410) pilB 5758282..5759982 (+) 1701 WP_046065032.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HU749_RS25415 (HU749_025415) pilC 5759985..5761202 (+) 1218 WP_079301776.1 type II secretion system F family protein Machinery gene
  HU749_RS25420 (HU749_025420) pilD 5761204..5762073 (+) 870 WP_079301775.1 prepilin peptidase Machinery gene
  HU749_RS25425 (HU749_025425) coaE 5762073..5762696 (+) 624 WP_186652354.1 dephospho-CoA kinase -
  HU749_RS25430 (HU749_025430) yacG 5762693..5762893 (+) 201 WP_041476151.1 DNA gyrase inhibitor YacG -
  HU749_RS25435 (HU749_025435) - 5762890..5763105 (-) 216 WP_013694234.1 hypothetical protein -
  HU749_RS25440 (HU749_025440) - 5763169..5763855 (-) 687 WP_079301773.1 energy-coupling factor ABC transporter permease -
  HU749_RS25445 (HU749_025445) - 5763897..5764307 (-) 411 WP_003205679.1 tautomerase family protein -
  HU749_RS25450 (HU749_025450) - 5764459..5765358 (+) 900 WP_186652356.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44257.98 Da        Isoelectric Point: 10.0235

>NTDB_id=578971 HU749_RS25415 WP_079301776.1 5759985..5761202(+) (pilC) [Pseudomonas ogarae strain SWRI108]
MAVKAVKTDVYTWEGKDRKGAKMTGELTGQSPALVKAQLRKQGINPQKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDQVKQEVAAGNSFAASLRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPTAVILVAAVVTGILLVKVVPQFESVFSGFGAQLPAFTVMVIGLSEFMQEWWWMLLGGLAGAFFGVK
YALKRSQAFRDWRDKWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIRQDVSTGM
QLNFSMRASGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=578971 HU749_RS25415 WP_079301776.1 5759985..5761202(+) (pilC) [Pseudomonas ogarae strain SWRI108]
ATGGCGGTCAAGGCAGTAAAAACCGACGTCTATACGTGGGAAGGCAAAGACCGCAAAGGCGCGAAAATGACCGGCGAGCT
GACGGGGCAGAGCCCGGCCCTGGTCAAGGCACAGCTGCGCAAACAAGGCATCAACCCGCAGAAGGTGCGCAAGAAATCCA
CCTCGATATTCAGCAAGGGCAAGCGCATCAAGCCGCTGGATATCGCCCTCTTCACCCGCCAGATGGCCACGATGCTCAAG
GCTGGTGTACCCCTGCTGCAAGCGTTCGACATCATCGGCGAAGGCTTCGACAACGCCAACATGCGCAAGCTGGTGGACCA
GGTGAAGCAGGAAGTTGCCGCTGGCAACAGCTTCGCCGCCTCGCTGCGCAAGTGCCCGCAATATTTCGACGAGCTGTACT
GCAATCTGGTGGACGCCGGTGAGCAGGCTGGCGCCCTGGACACGCTGCTGGACCGGGTCGCGACCTACAAGGAAAAGAGC
GAAGCCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGACGGCGGTGATACTAGTCGCAGCGGTGGTCACCGGCAT
CCTGCTGGTCAAGGTGGTGCCGCAGTTCGAATCGGTATTCTCCGGGTTCGGTGCGCAACTGCCGGCCTTCACGGTGATGG
TCATCGGCCTGTCGGAATTCATGCAGGAGTGGTGGTGGATGCTGCTTGGCGGCTTGGCGGGGGCTTTTTTCGGGGTGAAA
TATGCCCTCAAGCGTTCCCAGGCGTTTCGTGACTGGCGAGACAAATGGCTGCTCAAGCTCCCCTTGATAGGTACCTTGAT
GTACAAGTCTGCGGTGGCTCGCTATGCCCGCACGCTCTCGACGACATTCGCCGCTGGCGTGCCGCTGGTCGAAGCCCTCG
ACTCGGTATCGGGCGCCACCGGCAACGTGGTGTTCAAGCGTGCCGTGCAGCGCATCCGCCAGGATGTCTCGACCGGCATG
CAGTTGAATTTTTCCATGCGTGCCTCAGGGATCTTTCCGAACCTGGCGATCCAGATGACCGCCATCGGCGAGGAGTCCGG
CGCGCTGGACGACATGCTCGACAAAGTGGCGAGCTTTTATGAGGCCGAGGTGGACAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGGTCCTGGGGGTCGTCGTCGGTGGCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.321

100

0.743
  pilC Acinetobacter baylyi ADP1

59.799

98.272

0.588
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

55.051

97.778

0.538
  pilG Neisseria gonorrhoeae MS11

43.035

99.259

0.427
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilC Vibrio campbellii strain DS40M4

43.182

97.778

0.422
  pilG Neisseria meningitidis 44/76-A

42.537

99.259

0.422
  pilC Thermus thermophilus HB27

37.157

99.012

0.368