Detailed information NTG0578972

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HU749_RS25420
• Genome accession: NZ_CP077086
• Coordinates: 5761204..5762073 (+)
• Length: 289 a.a.
• NCBI ID: WP_079301775.1
• Uniprot ID: -
• Organism: Pseudomonas ogarae strain SWRI108
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5756204..5767073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU749_RS25395 (HU749_025395)	-	5756335..5756625 (+)	291	WP_079301778.1	DUF2845 domain-containing protein	-
HU749_RS25400 (HU749_025400)	-	5756953..5757306 (-)	354	WP_003205664.1	BON domain-containing protein	-
HU749_RS25405 (HU749_025405)	-	5757626..5758057 (-)	432	WP_079301777.1	pilin	-
HU749_RS25410 (HU749_025410)	pilB	5758282..5759982 (+)	1701	WP_046065032.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HU749_RS25415 (HU749_025415)	pilC	5759985..5761202 (+)	1218	WP_079301776.1	type II secretion system F family protein	Machinery gene
HU749_RS25420 (HU749_025420)	pilD	5761204..5762073 (+)	870	WP_079301775.1	prepilin peptidase	Machinery gene
HU749_RS25425 (HU749_025425)	coaE	5762073..5762696 (+)	624	WP_186652354.1	dephospho-CoA kinase	-
HU749_RS25430 (HU749_025430)	yacG	5762693..5762893 (+)	201	WP_041476151.1	DNA gyrase inhibitor YacG	-
HU749_RS25435 (HU749_025435)	-	5762890..5763105 (-)	216	WP_013694234.1	hypothetical protein	-
HU749_RS25440 (HU749_025440)	-	5763169..5763855 (-)	687	WP_079301773.1	energy-coupling factor ABC transporter permease	-
HU749_RS25445 (HU749_025445)	-	5763897..5764307 (-)	411	WP_003205679.1	tautomerase family protein	-
HU749_RS25450 (HU749_025450)	-	5764459..5765358 (+)	900	WP_186652356.1	LysR substrate-binding domain-containing protein	-
HU749_RS25455 (HU749_025455)	-	5765974..5766600 (+)	627	WP_003205682.1	DUF1780 domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31987.20 Da
• Isoelectric Point: 8.0578

>NTDB_id=578972 HU749_RS25420 WP_079301775.1 5761204..5762073(+) (pilD) [Pseudomonas ogarae strain SWRI108]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGRRYPLTELTCGALSAFVAWHFGFGWHAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVPLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=578972 HU749_RS25420 WP_079301775.1 5761204..5762073(+) (pilD) [Pseudomonas ogarae strain SWRI108]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCCTTCGTGCTCGTTGCGGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCAATCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATTGGCAGGCG
CTACCCCCTGACCGAATTGACCTGCGGTGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGTCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGCCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTATTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCTTGCGTGATGCTCCCGGGTCGACGCAGATCCCTTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.113	98.27	0.512
pilD	Vibrio campbellii strain DS40M4	50.526	98.616	0.498
pilD	Neisseria gonorrhoeae MS11	47.735	99.308	0.474
pilD	Acinetobacter baumannii D1279779	48.043	97.232	0.467
pilD	Acinetobacter nosocomialis M2	48.043	97.232	0.467