Detailed information NTG0057889

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: SPN032672_RS06310
• Genome accession: NC_021003
• Coordinates: 1174037..1174432 (+)
• Length: 131 a.a.
• NCBI ID: WP_000282467.1
• Uniprot ID: A0A098Z0L0
• Organism: Streptococcus pneumoniae SPN032672
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1169037..1179432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPN032672_RS06265	-	1169171..1169533 (+)	363	WP_000078808.1	DUF2200 domain-containing protein	-
SPN032672_RS06270	-	1169530..1170045 (+)	516	WP_000800937.1	phosphatase PAP2 family protein	-
SPN032672_RS06275	-	1170147..1170593 (+)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
SPN032672_RS06280	-	1170599..1171273 (+)	675	WP_000725751.1	LiaF transmembrane domain-containing protein	-
SPN032672_RS06285	-	1171434..1171625 (+)	192	WP_000291826.1	cell wall-binding protein	-
SPN032672_RS13665	-	1171632..1171712 (+)	81	WP_223200463.1	hypothetical protein	-
SPN032672_RS06290	-	1171910..1172209 (+)	300	WP_001013974.1	DUF4651 domain-containing protein	-
SPN032672_RS06295	-	1172206..1172523 (+)	318	WP_000615767.1	thioredoxin family protein	-
SPN032672_RS06300	ytpR	1172539..1173165 (+)	627	WP_000578316.1	YtpR family tRNA-binding protein	-
SPN032672_RS06305	-	1173198..1173959 (+)	762	WP_001107757.1	SDR family oxidoreductase	-
SPN032672_RS06310	ssbB/cilA	1174037..1174432 (+)	396	WP_000282467.1	single-stranded DNA-binding protein	Machinery gene
SPN032672_RS06315	groES	1174702..1174986 (+)	285	WP_000917330.1	co-chaperone GroES	-
SPN032672_RS06320	groL	1175002..1176624 (+)	1623	WP_000031573.1	chaperonin GroEL	-
SPN032672_RS12875	-	1176762..1177518 (+)	757	Protein_1166	epoxyqueuosine reductase QueH	-
SPN032672_RS06330	-	1177958..1178491 (-)	534	WP_000775321.1	DUF402 domain-containing protein	-
SPN032672_RS06335	recX	1178580..1179356 (-)	777	WP_000705094.1	recombination regulator RecX	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14925.89 Da
• Isoelectric Point: 5.9409

>NTDB_id=57889 SPN032672_RS06310 WP_000282467.1 1174037..1174432(+) (ssbB/cilA) [Streptococcus pneumoniae SPN032672]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=57889 SPN032672_RS06310 WP_000282467.1 1174037..1174432(+) (ssbB/cilA) [Streptococcus pneumoniae SPN032672]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTAACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: A0A098Z0L0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae D39	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	100	100	1
ssbB/cilA	Streptococcus pneumoniae R6	100	100	1
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	98.473	100	0.985
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405