Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KSS93_RS03710 Genome accession   NZ_CP077075
Coordinates   835226..836470 (+) Length   414 a.a.
NCBI ID   WP_217887200.1    Uniprot ID   -
Organism   Pseudomonas xanthosomatis strain COR54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 830226..841470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS93_RS03690 (KSS93_03690) - 830257..832710 (-) 2454 WP_217887196.1 penicillin-binding protein 1A -
  KSS93_RS03695 (KSS93_03695) pilM 832827..833747 (+) 921 WP_217887197.1 type IV pilus biogenesis protein PilM -
  KSS93_RS03700 (KSS93_03700) - 833747..834283 (+) 537 WP_217887198.1 PilN domain-containing protein -
  KSS93_RS03705 (KSS93_03705) - 834280..835293 (+) 1014 WP_217887199.1 pilus assembly protein PilP -
  KSS93_RS03710 (KSS93_03710) pilQ 835226..836470 (+) 1245 WP_217887200.1 type IV pilus secretin PilQ Machinery gene
  KSS93_RS03715 (KSS93_03715) aroK 836475..836993 (+) 519 WP_217840759.1 shikimate kinase AroK -
  KSS93_RS03720 (KSS93_03720) aroB 837093..838190 (+) 1098 WP_217887201.1 3-dehydroquinate synthase -
  KSS93_RS03725 (KSS93_03725) - 838206..839804 (+) 1599 WP_217887202.1 AAA family ATPase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45111.18 Da        Isoelectric Point: 5.3823

>NTDB_id=578682 KSS93_RS03710 WP_217887200.1 835226..836470(+) (pilQ) [Pseudomonas xanthosomatis strain COR54]
MKLAIVWMSVLLMAIYPAQAAPKKGEPMSLNFQDVEVRSVLQVMADFAGINLVASDTVQGRITLRLESVPWEQALDLVLR
SKGLGRRMEGSVMVVAPLAELAGQGVELEQAPLQRELLAIHHANASELAELLLASLADESVFAVRGSVGVDARTNTLVVV
QPPGRLAELRELVARLDVPVRQVMIEARIVEAGVDYEKVLGVRWGRQLYGGNARLGHELFVDLGVERATSGVGVGLLRSD
ILLDLELSAMEKSGHGEIISQPKVVTADKETARIIKGTEVPYQETTKSGATSISFREASLSLEVTPQITPDGKVVMEVRV
TKDEPDFVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQNKVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFL
TPRIMNDQAIAVSR

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=578682 KSS93_RS03710 WP_217887200.1 835226..836470(+) (pilQ) [Pseudomonas xanthosomatis strain COR54]
ATGAAACTGGCAATAGTCTGGATGTCGGTGTTGCTGATGGCGATCTACCCGGCGCAGGCAGCGCCTAAGAAGGGTGAGCC
GATGTCGCTGAATTTTCAGGATGTCGAAGTTCGTTCAGTGTTGCAGGTGATGGCCGATTTTGCCGGCATCAACCTGGTGG
CCAGCGATACGGTGCAGGGCCGCATTACTTTGCGCCTGGAGTCGGTGCCCTGGGAGCAGGCGCTCGACCTGGTGCTGCGC
AGCAAGGGGCTGGGCCGGCGCATGGAAGGCTCGGTGATGGTGGTGGCGCCGCTTGCCGAGCTGGCCGGGCAGGGTGTGGA
GCTGGAGCAGGCGCCGTTGCAGCGGGAACTGCTGGCCATCCATCACGCCAATGCCAGCGAATTGGCCGAACTGTTGCTGG
CCAGCCTGGCCGACGAGAGTGTTTTCGCCGTGCGCGGCAGTGTCGGCGTGGACGCGCGGACCAACACGCTGGTGGTGGTA
CAGCCGCCAGGCCGGTTGGCCGAGCTGCGCGAGCTGGTGGCGAGGCTGGATGTGCCCGTTCGTCAGGTAATGATCGAAGC
GCGCATCGTCGAAGCTGGGGTGGATTACGAAAAAGTCCTTGGGGTGCGCTGGGGGCGTCAGTTGTATGGGGGGAATGCCC
GCCTGGGCCATGAACTGTTCGTCGACCTGGGGGTGGAGCGGGCTACGTCAGGTGTTGGTGTGGGGTTGCTGCGCAGCGAT
ATCCTGCTGGATCTGGAGCTGAGCGCCATGGAGAAGAGCGGCCATGGCGAGATCATCTCGCAACCCAAGGTGGTCACCGC
CGACAAGGAAACCGCGCGCATCATCAAGGGCACCGAGGTGCCGTACCAGGAAACCACCAAAAGCGGCGCCACCTCGATTT
CCTTTCGCGAGGCCTCGCTGTCGCTGGAGGTGACGCCGCAGATCACCCCCGACGGCAAGGTGGTCATGGAGGTGCGGGTG
ACCAAGGACGAGCCTGACTTCGTCAATGCCCTGAACAACGTCCCGCCGATCCGCAAGAACGAGGTCAATGCCAAGGTGCG
GGTGGCCGATGGCGAAACCATTGTGATTGGTGGCGTGTACTCGACGTCGCAGAACAAAGTGGTGGATAAGGTGCCATTTT
TCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTG
ACTCCGCGTATCATGAATGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(118-182)

Bacterial type II and III secretion system protein (Secretin)

(249-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

57.143

100

0.599
  comQ Acinetobacter baylyi ADP1

43.146

100

0.464
  pilQ Acinetobacter baumannii strain A118

41.703

100

0.461
  pilQ Acinetobacter baumannii D1279779

41.703

100

0.461
  pilQ Legionella pneumophila strain Lp02

42.488

100

0.437
  pilQ Legionella pneumophila strain ERS1305867

42.488

100

0.437
  pilQ Vibrio campbellii strain DS40M4

40.471

100

0.415
  pilQ Vibrio cholerae strain A1552

40.662

100

0.415
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.662

100

0.415
  pilQ Neisseria gonorrhoeae strain FA1090

35.697

100

0.365
  pilQ Neisseria meningitidis MC58

35.545

100

0.362