Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KQ257_RS08915 Genome accession   NZ_CP076817
Coordinates   1836391..1836828 (-) Length   145 a.a.
NCBI ID   WP_000993715.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC24137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1834815..1835905 1836391..1836828 flank 486


Gene organization within MGE regions


Location: 1834815..1836828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ257_RS08905 (KQ257_08875) - 1834815..1835905 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  KQ257_RS08910 - 1835923..1836333 (-) 411 Protein_1744 O-antigen ligase domain-containing protein -
  KQ257_RS08915 (KQ257_08880) pilA 1836391..1836828 (-) 438 WP_000993715.1 pilin Machinery gene

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15022.14 Da        Isoelectric Point: 8.1097

>NTDB_id=578225 KQ257_RS08915 WP_000993715.1 1836391..1836828(-) (pilA) [Acinetobacter baumannii strain UC24137]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS

Nucleotide


Download         Length: 438 bp        

>NTDB_id=578225 KQ257_RS08915 WP_000993715.1 1836391..1836828(-) (pilA) [Acinetobacter baumannii strain UC24137]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

52.414

100

0.524
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.218

100

0.448
  pilA Vibrio cholerae strain A1552

44.218

100

0.448
  pilA Vibrio cholerae C6706

44.218

100

0.448
  pilA Pseudomonas aeruginosa PAK

41.558

100

0.441
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.357

98.621

0.428
  comP Acinetobacter baylyi ADP1

40

100

0.414
  pilA Haemophilus influenzae 86-028NP

38.816

100

0.407
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.845

97.931

0.4
  pilA Vibrio parahaemolyticus RIMD 2210633

43.651

86.897

0.379