Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KRG72_RS00785 Genome accession   NZ_CP076703
Coordinates   114849..115244 (+) Length   131 a.a.
NCBI ID   WP_039697429.1    Uniprot ID   A0A091BN91
Organism   Streptococcus equinus strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 109849..120244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS00740 (KRG72_00740) - 109951..110148 (+) 198 WP_258255458.1 helix-turn-helix transcriptional regulator -
  KRG72_RS00745 (KRG72_00745) - 110164..110364 (+) 201 WP_006531740.1 hypothetical protein -
  KRG72_RS00750 (KRG72_00750) - 110365..110820 (+) 456 WP_258255459.1 ABC transporter permease -
  KRG72_RS00755 (KRG72_00755) - 110836..111471 (+) 636 WP_074965272.1 CPBP family intramembrane glutamic endopeptidase -
  KRG72_RS00760 (KRG72_00760) proC 111506..112276 (-) 771 WP_258255460.1 pyrroline-5-carboxylate reductase -
  KRG72_RS00765 (KRG72_00765) pepA 112338..113405 (-) 1068 WP_205396304.1 glutamyl aminopeptidase -
  KRG72_RS00770 (KRG72_00770) - 113523..113816 (+) 294 WP_039697425.1 DUF4651 domain-containing protein -
  KRG72_RS00775 (KRG72_00775) - 113809..114126 (+) 318 WP_039697426.1 thioredoxin family protein -
  KRG72_RS00780 (KRG72_00780) ytpR 114135..114761 (+) 627 WP_039697427.1 YtpR family tRNA-binding protein -
  KRG72_RS00785 (KRG72_00785) ssbA 114849..115244 (+) 396 WP_039697429.1 single-stranded DNA-binding protein Machinery gene
  KRG72_RS00790 (KRG72_00790) - 115418..116218 (+) 801 WP_039697430.1 Cof-type HAD-IIB family hydrolase -
  KRG72_RS00795 (KRG72_00795) - 116410..119205 (+) 2796 Protein_103 GH32 C-terminal domain-containing protein -
  KRG72_RS09335 - 119371..119472 (+) 102 Protein_104 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14874.91 Da        Isoelectric Point: 5.7916

>NTDB_id=577441 KRG72_RS00785 WP_039697429.1 114849..115244(+) (ssbA) [Streptococcus equinus strain S1]
MYNKVIMIGRLTAQPELVTTPTEKSVTRVTLAVNRRFKSQNGEREADFISLVVWGRLAETLVSYAGKGSLISVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=577441 KRG72_RS00785 WP_039697429.1 114849..115244(+) (ssbA) [Streptococcus equinus strain S1]
ATGTACAATAAAGTTATTATGATTGGGCGTTTGACAGCACAGCCTGAATTGGTGACAACGCCAACCGAAAAATCTGTTAC
ACGTGTAACACTAGCCGTTAACCGTCGTTTTAAATCGCAAAATGGTGAGCGTGAAGCGGATTTTATTTCGCTTGTGGTTT
GGGGGCGTTTAGCAGAAACGCTCGTTTCTTATGCTGGAAAAGGGAGTTTGATTTCTGTTGATGGAGAGCTTCGTACGCGT
AAATACGAAAAAGATGGTCACACCAATTATGTGACAGAAGTGCTCTGCCATTCTTTCCAACTATTAGAAAGTCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCCAATGATTTGGCTGACCTTGTGCTGGAAGAGGAAGAATTACCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A091BN91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405