Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H681_RS04960 Genome accession   NC_020829
Coordinates   1072224..1073441 (-) Length   405 a.a.
NCBI ID   WP_015475738.1    Uniprot ID   M4WUM6
Organism   Pseudomonas sp. ATCC 13867     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067224..1078441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H681_RS04915 (H681_04885) - 1067459..1067629 (-) 171 WP_015475729.1 DUF3094 domain-containing protein -
  H681_RS04920 (H681_04890) - 1067699..1068328 (-) 630 WP_015475730.1 DUF1780 domain-containing protein -
  H681_RS04925 (H681_04895) - 1068438..1068854 (+) 417 WP_015475731.1 GNAT family N-acetyltransferase -
  H681_RS04930 (H681_04900) - 1068857..1069324 (+) 468 WP_041711734.1 hypothetical protein -
  H681_RS04935 (H681_04905) - 1069321..1070010 (+) 690 WP_015475733.1 energy-coupling factor ABC transporter permease -
  H681_RS04940 (H681_04910) - 1070117..1070332 (+) 216 WP_015475734.1 hypothetical protein -
  H681_RS04945 (H681_04915) yacG 1070472..1070675 (-) 204 WP_015475735.1 DNA gyrase inhibitor YacG -
  H681_RS04950 (H681_04920) coaE 1070672..1071280 (-) 609 WP_015475736.1 dephospho-CoA kinase -
  H681_RS04955 (H681_04925) pilD 1071346..1072218 (-) 873 WP_015475737.1 A24 family peptidase Machinery gene
  H681_RS04960 (H681_04930) pilC 1072224..1073441 (-) 1218 WP_015475738.1 type II secretion system F family protein Machinery gene
  H681_RS04965 (H681_04935) pilB 1073445..1075148 (-) 1704 WP_041711736.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H681_RS04970 (H681_04940) - 1075374..1075835 (+) 462 WP_015475740.1 pilin -
  H681_RS26320 (H681_04945) - 1075927..1077852 (+) 1926 WP_015475741.1 hypothetical protein -
  H681_RS25655 - 1077836..1078321 (+) 486 WP_157883298.1 GtrA family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44248.69 Da        Isoelectric Point: 9.7454

>NTDB_id=57450 H681_RS04960 WP_015475738.1 1072224..1073441(-) (pilC) [Pseudomonas sp. ATCC 13867]
MAEKALRTSVFTWEGTDRKGGKVKGELSGTNTALVKAQLRKQGINPTKVRKKGISLLSKGKAIKPMDIALFTRQMATMMG
SGVPLLQSFDIIGEGFDNPNMRKLVDDIKQEVAAGNSLANSLRKKPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVVVVAIIVSAILLIKVVPQFQSVFANFGAELPAFTLFVISISEALQQWWFIVLIAMFAAAFTLR
EFHRRSEKFRDSMDRGVLKLPIVGDILYKSSVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRNAVNRIKQDVSSGT
QLNFSMRTTGVFPSMAIQMAAIGEESGSLDSMLDKVANYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=57450 H681_RS04960 WP_015475738.1 1072224..1073441(-) (pilC) [Pseudomonas sp. ATCC 13867]
ATGGCGGAAAAAGCATTGAGGACCAGTGTCTTTACCTGGGAAGGCACTGATCGCAAGGGCGGGAAAGTCAAAGGGGAGCT
TTCCGGGACCAACACGGCGCTGGTCAAGGCTCAACTGCGCAAGCAGGGGATCAACCCGACCAAGGTTCGCAAGAAAGGCA
TCTCACTGCTGAGCAAGGGCAAGGCGATCAAGCCAATGGACATCGCCCTGTTCACCCGGCAGATGGCGACCATGATGGGC
TCGGGCGTTCCGCTGCTGCAGTCCTTCGACATCATCGGTGAGGGCTTCGACAATCCGAACATGCGTAAGCTGGTGGACGA
TATCAAGCAGGAGGTCGCAGCCGGTAACAGCCTGGCCAACTCCCTGCGCAAAAAGCCACAATATTTCGACGATCTATACT
GCAACTTGGTGGATGCCGGCGAACAGTCCGGCGCCCTGGAGACCCTGCTCGACCGCGTGGCGACCTACAAGGAAAAGACC
GAGTCGCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCCCATTGCAGTGGTCGTCGTCGCCATCATTGTGTCAGCCAT
CTTGTTGATCAAGGTAGTGCCGCAGTTCCAGTCGGTATTCGCCAACTTCGGCGCGGAACTACCGGCCTTCACCCTCTTCG
TCATTTCCATTTCGGAAGCGTTGCAGCAATGGTGGTTTATTGTCCTGATCGCCATGTTCGCAGCGGCATTCACCCTCAGA
GAATTCCACAGGCGCTCCGAAAAGTTCAGAGACTCAATGGATCGTGGTGTACTGAAACTGCCCATTGTCGGCGACATCCT
CTACAAGTCCTCGGTCGCCCGTTACGCCCGCACACTGTCCACCACCTTCGCCGCCGGCGTACCGCTAGTAGAAGCGCTGG
ACTCAGTCTCCGGCGCCACTGGCAACGTGGTGTTCCGCAATGCGGTCAACAGGATCAAACAGGACGTCTCCTCCGGTACC
CAACTGAACTTCTCCATGCGCACCACCGGCGTCTTCCCCAGCATGGCCATCCAGATGGCGGCCATCGGCGAGGAGTCCGG
TTCACTGGATTCCATGCTGGACAAGGTCGCCAACTACTACGAGGAAGAGGTCGACAACGCCGTCGACAACCTGACCACAC
TGATGGAGCCGATGATCATGGCCGTGCTCGGCGTACTGGTCGGCGGCCTGATCATCGCCATGTACCTTCCGATCTTCCAA
CTGGGCAACGTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4WUM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.235

100

0.812
  pilC Acinetobacter baumannii D1279779

60

100

0.6
  pilC Acinetobacter baylyi ADP1

59.606

100

0.598
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria meningitidis 44/76-A

45.707

97.778

0.447
  pilG Neisseria gonorrhoeae MS11

45.455

97.778

0.444
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Vibrio campbellii strain DS40M4

39.899

97.778

0.39
  pilC Thermus thermophilus HB27

37.406

99.012

0.37

Multiple sequence alignment