Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KM579_RS16030 Genome accession   NZ_CP076252
Coordinates   3605724..3606983 (+) Length   419 a.a.
NCBI ID   WP_074379066.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. graminis strain ART-Xtg9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3600724..3611983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM579_RS15995 (KM579_15880) - 3600734..3601027 (+) 294 WP_009580422.1 addiction module antidote protein -
  KM579_RS16000 (KM579_15885) pilB 3601055..3602791 (-) 1737 WP_009580420.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KM579_RS16005 (KM579_15890) - 3602998..3603288 (+) 291 WP_009580418.1 nucleotidyltransferase family protein -
  KM579_RS16010 (KM579_15895) - 3603285..3603605 (+) 321 WP_009580416.1 DUF86 domain-containing protein -
  KM579_RS16015 - 3603705..3603956 (+) 252 WP_009580414.1 transposase -
  KM579_RS16020 - 3603957..3604262 (+) 306 WP_231103532.1 hypothetical protein -
  KM579_RS16025 (KM579_15905) pilA/pilAI 3604924..3605334 (-) 411 WP_039955568.1 pilin Machinery gene
  KM579_RS16030 (KM579_15910) pilC 3605724..3606983 (+) 1260 WP_074379066.1 type II secretion system F family protein Machinery gene
  KM579_RS16035 (KM579_15915) - 3606990..3607853 (+) 864 WP_009580408.1 prepilin peptidase -
  KM579_RS16040 (KM579_15920) coaE 3607867..3608487 (+) 621 WP_074379065.1 dephospho-CoA kinase -
  KM579_RS16045 (KM579_15925) - 3608610..3609944 (-) 1335 WP_009580404.1 sensor histidine kinase -
  KM579_RS16050 (KM579_15930) - 3609937..3610614 (-) 678 WP_003466405.1 response regulator transcription factor -
  KM579_RS16055 - 3610713..3610907 (-) 195 WP_231103461.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45476.60 Da        Isoelectric Point: 10.1825

>NTDB_id=574061 KM579_RS16030 WP_074379066.1 3605724..3606983(+) (pilC) [Xanthomonas translucens pv. graminis strain ART-Xtg9]
MSATRSAVSKEPVARNTSQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKLKPKPLFGAAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMGVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIIHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=574061 KM579_RS16030 WP_074379066.1 3605724..3606983(+) (pilC) [Xanthomonas translucens pv. graminis strain ART-Xtg9]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATACCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACGCCGTCGGTGGTCAAGCTGAAACCCAAGCCCTTGTTCGGTGCCGCCGGCAGCAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGACAGGTCCGCACGGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGTGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGGTGTGGCGCTCCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGACTGATCCTGAAGGTGCCGATCATCGGCCAGATCATTCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAGAAA
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTGGGCTACCCGGTCAATGTGGCGATGAAACAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTAGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

51.733

96.42

0.499
  pilC Acinetobacter baylyi ADP1

50.735

97.375

0.494
  pilC Acinetobacter baumannii D1279779

50.245

97.375

0.489
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria gonorrhoeae MS11

42.714

94.988

0.406
  pilG Neisseria meningitidis 44/76-A

42.105

95.227

0.401
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379
  pilC Thermus thermophilus HB27

38.75

95.465

0.37