Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SAI8T7_RS10100 Genome accession   NC_020568
Coordinates   2018169..2018594 (-) Length   141 a.a.
NCBI ID   WP_000934384.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ST228     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2013169..2023594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAI8T7_RS10055 - 2013317..2013721 (-) 405 WP_031895320.1 DUF1064 domain-containing protein -
  SAI8T7_RS10060 - 2013718..2014143 (-) 426 WP_000451861.1 phage N-6-adenine-methyltransferase -
  SAI8T7_RS10065 - 2014153..2014374 (-) 222 WP_001123688.1 DUF3269 family protein -
  SAI8T7_RS10070 - 2014378..2014593 (-) 216 WP_001024405.1 hypothetical protein -
  SAI8T7_RS10075 (SAI8T7_1014820) - 2014590..2015831 (-) 1242 WP_015445891.1 DnaB helicase C-terminal domain-containing protein -
  SAI8T7_RS10080 - 2015828..2016184 (-) 357 WP_001132243.1 hypothetical protein -
  SAI8T7_RS10085 (SAI8T7_1014830) - 2016184..2016939 (-) 756 WP_001037657.1 DnaD domain protein -
  SAI8T7_RS10090 (SAI8T7_1014840) - 2016932..2017606 (-) 675 WP_015445893.1 putative HNHc nuclease -
  SAI8T7_RS10095 (SAI8T7_1014850) - 2017607..2018158 (-) 552 WP_001004506.1 NUMOD4 domain-containing protein -
  SAI8T7_RS10100 ssbA 2018169..2018594 (-) 426 WP_000934384.1 single-stranded DNA-binding protein Machinery gene
  SAI8T7_RS10105 (SAI8T7_1014860) - 2018594..2019217 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  SAI8T7_RS10110 - 2019210..2019431 (-) 222 WP_000815403.1 DUF2483 family protein -
  SAI8T7_RS10115 - 2019441..2019701 (-) 261 WP_000291076.1 DUF1108 family protein -
  SAI8T7_RS10120 - 2019793..2019954 (-) 162 WP_000066021.1 DUF1270 family protein -
  SAI8T7_RS10125 - 2019966..2020229 (-) 264 WP_001124198.1 helix-turn-helix domain-containing protein -
  SAI8T7_RS15070 - 2020379..2020477 (-) 99 Protein_1925 hypothetical protein -
  SAI8T7_RS10135 - 2020474..2020800 (-) 327 WP_001025595.1 hypothetical protein -
  SAI8T7_RS10140 (SAI8T7_1014870) - 2020856..2021488 (+) 633 WP_001814660.1 hypothetical protein -
  SAI8T7_RS10145 - 2021503..2021643 (-) 141 WP_000939500.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15784.48 Da        Isoelectric Point: 8.4826

>NTDB_id=57317 SAI8T7_RS10100 WP_000934384.1 2018169..2018594(-) (ssbA) [Staphylococcus aureus subsp. aureus ST228]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=57317 SAI8T7_RS10100 WP_000934384.1 2018169..2018594(-) (ssbA) [Staphylococcus aureus subsp. aureus ST228]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.729

83.688

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.844

100

0.418
  ssbA Streptococcus mutans UA159

46.087

81.56

0.376
  ssbB/cilA Streptococcus mitis NCTC 12261

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae Rx1

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae D39

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae R6

44.068

83.688

0.369
  ssbB/cilA Streptococcus mitis SK321

44.068

83.688

0.369

Multiple sequence alignment