Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MMZ71_RS00105 Genome accession   NZ_CP093022
Coordinates   22393..23481 (+) Length   362 a.a.
NCBI ID   WP_058154653.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H08     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17393..28481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ71_RS00085 (MMZ71_00085) rsmB 18288..19592 (-) 1305 WP_058154655.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  MMZ71_RS00090 (MMZ71_00090) fmt 19589..20533 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  MMZ71_RS00095 (MMZ71_00095) def 20588..21094 (-) 507 WP_003097293.1 peptide deformylase -
  MMZ71_RS00100 (MMZ71_00100) tsaP 21233..22258 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MMZ71_RS00105 (MMZ71_00105) dprA 22393..23481 (+) 1089 WP_058154653.1 DNA-processing protein DprA Machinery gene
  MMZ71_RS00110 (MMZ71_00110) - 23522..24079 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  MMZ71_RS00115 (MMZ71_00115) - 24089..25066 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  MMZ71_RS00120 (MMZ71_00120) hemF 25257..26174 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  MMZ71_RS00125 (MMZ71_00125) aroE 26232..27056 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  MMZ71_RS00130 (MMZ71_00130) - 27167..28153 (+) 987 WP_058154651.1 hypothetical protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37757.33 Da        Isoelectric Point: 7.0742

>NTDB_id=569734 MMZ71_RS00105 WP_058154653.1 22393..23481(+) (dprA) [Pseudomonas aeruginosa strain H08]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPVEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPVQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=569734 MMZ71_RS00105 WP_058154653.1 22393..23481(+) (dprA) [Pseudomonas aeruginosa strain H08]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGTCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
TCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATCCCGGGCTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGTGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.808

97.79

0.409
  dprA Legionella pneumophila strain ERS1305867

49.655

80.11

0.398
  dprA Acinetobacter baumannii D1279779

38.81

97.514

0.378
  dprA Acinetobacter baumannii strain A118

38.81

97.514

0.378
  dprA Glaesserella parasuis strain SC1401

47.203

79.006

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Neisseria meningitidis MC58

44.333

82.873

0.367
  dprA Neisseria meningitidis strain C311

44.333

82.873

0.367
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367