Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KI797_RS18300 Genome accession   NZ_CP075564
Coordinates   3962652..3963893 (+) Length   413 a.a.
NCBI ID   WP_043133310.1    Uniprot ID   -
Organism   Aeromonas media strain TR3_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3957652..3968893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI797_RS18275 (KI797_18215) ampD 3958001..3958573 (-) 573 WP_182787467.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KI797_RS18280 (KI797_18220) - 3958719..3959180 (+) 462 WP_371316622.1 TIGR02281 family clan AA aspartic protease -
  KI797_RS18285 (KI797_18225) nadC 3959184..3960047 (+) 864 WP_226170489.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KI797_RS18290 (KI797_18230) - 3960360..3960812 (+) 453 WP_371316620.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KI797_RS18295 (KI797_18235) pilB 3960816..3962522 (+) 1707 WP_226170492.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  KI797_RS18300 (KI797_18240) pilC 3962652..3963893 (+) 1242 WP_043133310.1 type II secretion system F family protein Machinery gene
  KI797_RS18305 (KI797_18245) pilD 3963974..3964846 (+) 873 WP_042649027.1 A24 family peptidase Machinery gene
  KI797_RS18310 (KI797_18250) coaE 3964865..3965479 (+) 615 WP_226170495.1 dephospho-CoA kinase -
  KI797_RS18315 (KI797_18255) zapD 3965517..3966239 (+) 723 WP_226170498.1 cell division protein ZapD -
  KI797_RS18320 (KI797_18260) yacG 3966249..3966443 (+) 195 WP_042649030.1 DNA gyrase inhibitor YacG -
  KI797_RS18325 (KI797_18265) mutT 3966519..3966923 (-) 405 WP_005332118.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45535.60 Da        Isoelectric Point: 10.1464

>NTDB_id=569689 KI797_RS18300 WP_043133310.1 3962652..3963893(+) (pilC) [Aeromonas media strain TR3_1]
MATLAQKRNTPKKVFSFRWHGFNRKGQKVSGEFQADSINTVKAELRKQGVNVTKVSKQGQGLFSKGGARIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIATDVETGTPLSEALRRHPRHFDALYCDLVDAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPVFTRFVIGISRFMQAWWYIIFGGTA
LAIFLYVRAWRKSQKVRDNTDRFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAILAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=569689 KI797_RS18300 WP_043133310.1 3962652..3963893(+) (pilC) [Aeromonas media strain TR3_1]
ATGGCAACATTAGCGCAAAAACGTAACACACCTAAAAAGGTCTTCTCCTTCCGCTGGCATGGATTCAATCGCAAGGGACA
AAAGGTTTCCGGTGAGTTCCAGGCCGACAGCATCAACACCGTCAAGGCGGAGCTGCGCAAGCAGGGCGTCAATGTCACCA
AGGTCAGCAAGCAGGGCCAGGGCCTGTTTTCCAAGGGGGGTGCTCGGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCGGCCGGTGTGCCGCTGGTGCAAAGCTTGCAGATCATCGCCCGCGGTCATGAGAAGGCAGC
AGTACGCGAACTCATCGGCCAGATCGCCACCGATGTGGAAACCGGCACCCCGCTGTCGGAGGCGCTGCGCCGCCACCCCC
GTCACTTCGATGCGCTCTACTGCGATCTGGTAGACGCAGGGGAGCAGTCCGGCGCGCTGGAAACTATCTACGACCGGATT
GCCACATACCGCGAGAAGAGTGAGGCGCTGAAGTCCAAGATCAAGAAGGCAATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCATTGTGACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGAGATCTTCAAGAGCTTCGGAGCAGAGC
TGCCAGTCTTCACCCGATTCGTCATCGGTATCTCCCGCTTCATGCAAGCTTGGTGGTATATCATCTTTGGTGGCACAGCC
TTGGCCATCTTCCTCTATGTGCGCGCCTGGCGAAAATCCCAGAAGGTACGGGACAACACCGACAGATTCATCCTCACCAT
TCCGGTCGTGGGCAACATATTGCACAAGGCGGCCATGGCCCGTTTCGCCCGTACCCTCTCCACCACCTTCTCCGCCGGGA
TACCTCTGGTGGATGCTCTGGTATCAGCGGCCGGCGCCTCTGGCAACTATGTCTATCGCACGGCCATCCTGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTCGCCATGCGTACCGTGGATCTCTTCCCAGACATGGTGATCCAGATGGT
GATGATTGGTGAAGAGTCAGGCGCCATCGATGACATGCTCTCCAAGGTTGCCGCCATCTTCGAGCAGGAGGTGGACGACA
TGGTCGATGGCCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTACTCGGGGTGCTGGTCGGTGGCATGGTCGTCGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.818

95.884

0.545
  pilC Legionella pneumophila strain ERS1305867

53.086

98.063

0.521
  pilC Acinetobacter baumannii D1279779

51.122

97.094

0.496
  pilC Acinetobacter baylyi ADP1

50.63

96.126

0.487
  pilC Vibrio cholerae strain A1552

48

96.852

0.465
  pilC Vibrio campbellii strain DS40M4

46.482

96.368

0.448
  pilG Neisseria gonorrhoeae MS11

40.05

97.337

0.39
  pilG Neisseria meningitidis 44/76-A

39.801

97.337

0.387
  pilC Thermus thermophilus HB27

39

96.852

0.378