Detailed information NTG0569690

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KI797_RS18305
• Genome accession: NZ_CP075564
• Coordinates: 3963974..3964846 (+)
• Length: 290 a.a.
• NCBI ID: WP_042649027.1
• Uniprot ID: -
• Organism: Aeromonas media strain TR3_1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3958974..3969846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI797_RS18285 (KI797_18225)	nadC	3959184..3960047 (+)	864	WP_226170489.1	carboxylating nicotinate-nucleotide diphosphorylase	-
KI797_RS18290 (KI797_18230)	-	3960360..3960812 (+)	453	WP_371316620.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
KI797_RS18295 (KI797_18235)	pilB	3960816..3962522 (+)	1707	WP_226170492.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
KI797_RS18300 (KI797_18240)	pilC	3962652..3963893 (+)	1242	WP_043133310.1	type II secretion system F family protein	Machinery gene
KI797_RS18305 (KI797_18245)	pilD	3963974..3964846 (+)	873	WP_042649027.1	A24 family peptidase	Machinery gene
KI797_RS18310 (KI797_18250)	coaE	3964865..3965479 (+)	615	WP_226170495.1	dephospho-CoA kinase	-
KI797_RS18315 (KI797_18255)	zapD	3965517..3966239 (+)	723	WP_226170498.1	cell division protein ZapD	-
KI797_RS18320 (KI797_18260)	yacG	3966249..3966443 (+)	195	WP_042649030.1	DNA gyrase inhibitor YacG	-
KI797_RS18325 (KI797_18265)	mutT	3966519..3966923 (-)	405	WP_005332118.1	8-oxo-dGTP diphosphatase MutT	-
KI797_RS18330 (KI797_18270)	secA	3967079..3969799 (-)	2721	WP_226170501.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32052.32 Da
• Isoelectric Point: 7.0918

>NTDB_id=569690 KI797_RS18305 WP_042649027.1 3963974..3964846(+) (pilD) [Aeromonas media strain TR3_1]
MVPLIELAQGLPWLYLSLIFLFSLMIGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=569690 KI797_RS18305 WP_042649027.1 3963974..3964846(+) (pilD) [Aeromonas media strain TR3_1]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGATTGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTACCGCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCACTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGCTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATCTGGCCGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGAATGGGTCATG
GCGACTTCAAGCTGCTGGCGGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCTTCACTG
GTCGGCGCCATCATTGGGATCGGACTTATCCTGCTGCGTAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTACCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.404	98.276	0.603
pilD	Vibrio campbellii strain DS40M4	56.055	99.655	0.559
pilD	Acinetobacter nosocomialis M2	52.518	95.862	0.503
pilD	Acinetobacter baumannii D1279779	52.158	95.862	0.5
pilD	Neisseria gonorrhoeae MS11	49.049	90.69	0.445