Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MMZ72_RS00105 Genome accession   NZ_CP093021
Coordinates   22401..23486 (+) Length   361 a.a.
NCBI ID   WP_241469312.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H09     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17401..28486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ72_RS00085 (MMZ72_00085) rsmB 18296..19600 (-) 1305 WP_121128059.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  MMZ72_RS00090 (MMZ72_00090) fmt 19597..20541 (-) 945 WP_121128061.1 methionyl-tRNA formyltransferase -
  MMZ72_RS00095 (MMZ72_00095) def 20596..21102 (-) 507 WP_003097293.1 peptide deformylase -
  MMZ72_RS00100 (MMZ72_00100) tsaP 21241..22266 (+) 1026 WP_024918144.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MMZ72_RS00105 (MMZ72_00105) dprA 22401..23486 (+) 1086 WP_241469312.1 DNA-processing protein DprA Machinery gene
  MMZ72_RS00110 (MMZ72_00110) - 23527..24084 (+) 558 WP_024918142.1 L-threonylcarbamoyladenylate synthase -
  MMZ72_RS00115 (MMZ72_00115) - 24094..25071 (-) 978 WP_241469313.1 NADPH:quinone reductase -
  MMZ72_RS00120 (MMZ72_00120) hemF 25262..26179 (+) 918 WP_024918140.1 oxygen-dependent coproporphyrinogen oxidase -
  MMZ72_RS00125 (MMZ72_00125) aroE 26237..27061 (+) 825 WP_024918139.1 shikimate dehydrogenase -
  MMZ72_RS00130 (MMZ72_00130) - 27172..28158 (+) 987 WP_241469314.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 37653.10 Da        Isoelectric Point: 7.0742

>NTDB_id=569632 MMZ72_RS00105 WP_241469312.1 22401..23486(+) (dprA) [Pseudomonas aeruginosa strain H09]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIFEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQQPHPLLALLRAAPY
TSEGLAAASGMTLPDVLATLTELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=569632 MMZ72_RS00105 WP_241469312.1 22401..23486(+) (dprA) [Pseudomonas aeruginosa strain H09]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGGTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTCCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGATCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCCCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCTTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCACCTGCGCAGCAGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCCTAC
ACCAGCGAAGGCCTGGCTGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCACCGAACTGGAACTCGACGG
CCGGGTTGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(298-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.446
  dprA Legionella pneumophila strain ERS1305867

43.38

98.338

0.427
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.643

97.784

0.407
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

46.865

83.934

0.393
  dprA Vibrio cholerae strain A1552

46.865

83.934

0.393
  dprA Acinetobacter baumannii D1279779

38.122

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

44.667

83.102

0.371
  dprA Neisseria meningitidis strain C311

46.048

80.609

0.371
  dprA Neisseria meningitidis MC58

46.048

80.609

0.371
  dprA Acinetobacter baumannii strain A118

37.892

97.23

0.368
  dprA Neisseria gonorrhoeae MS11

44.333

83.102

0.368
  dprA Glaesserella parasuis strain SC1401

46.503

79.224

0.368