Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KIP84_RS16935 Genome accession   NZ_CP075323
Coordinates   3531211..3532437 (+) Length   408 a.a.
NCBI ID   WP_125738580.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3526211..3537437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS16900 (KIP84_16905) rimP 3526882..3527406 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  KIP84_RS16920 (KIP84_16925) secG 3528044..3528373 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  KIP84_RS16925 (KIP84_16930) tpiA 3528386..3529180 (-) 795 WP_174723111.1 triose-phosphate isomerase -
  KIP84_RS16930 (KIP84_16935) pilB 3529472..3531184 (+) 1713 WP_174724348.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KIP84_RS16935 (KIP84_16940) pilC 3531211..3532437 (+) 1227 WP_125738580.1 type II secretion system F family protein Machinery gene
  KIP84_RS16940 (KIP84_16945) pilD 3532437..3533297 (+) 861 WP_002114758.1 A24 family peptidase Machinery gene
  KIP84_RS16945 (KIP84_16950) coaE 3533299..3533895 (+) 597 WP_032070755.1 dephospho-CoA kinase -
  KIP84_RS16950 (KIP84_16955) - 3533892..3534806 (-) 915 WP_174724350.1 DMT family transporter -
  KIP84_RS16955 (KIP84_16960) rlmB 3534842..3535591 (-) 750 WP_213688957.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KIP84_RS16960 (KIP84_16965) - 3535694..3536020 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  KIP84_RS16965 (KIP84_16970) - 3536097..3537407 (-) 1311 WP_213688958.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45041.48 Da        Isoelectric Point: 9.8207

>NTDB_id=568785 KIP84_RS16935 WP_125738580.1 3531211..3532437(+) (pilC) [Acinetobacter sp. BHS4]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=568785 KIP84_RS16935 WP_125738580.1 3531211..3532437(+) (pilC) [Acinetobacter sp. BHS4]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCTAAAGTCACTCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACAATTTTTACTAGGCAACTTGCAACG
ATGATGAAAGCAGGTGTGCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAGGTTGAAGGTGGTAGTACCTTTGCCTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTCTGTTCTCTTGTAGAATCTGGTGAACAATCAGGTGCGCTTGAAACCATGTTGGACCGCGTTGCAATTTATAAA
GAAAAAAGTGAATTGCTTAAACAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTCATCGTGGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGGGCAATTATTGCT
GCCTTTCTGGAAGCTAAAAAGCGAAGCAAGAAGTTTCGTGATGGCTTAGATAAACTCACACTGAAACTCCCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCACTCATTG
ATGCCCTTGAATCAACTGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACTGGTCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCGCTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTGGTAGGCGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365