Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIP84_RS16940 Genome accession   NZ_CP075323
Coordinates   3532437..3533297 (+) Length   286 a.a.
NCBI ID   WP_002114758.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3527437..3538297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS16920 (KIP84_16925) secG 3528044..3528373 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  KIP84_RS16925 (KIP84_16930) tpiA 3528386..3529180 (-) 795 WP_174723111.1 triose-phosphate isomerase -
  KIP84_RS16930 (KIP84_16935) pilB 3529472..3531184 (+) 1713 WP_174724348.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KIP84_RS16935 (KIP84_16940) pilC 3531211..3532437 (+) 1227 WP_125738580.1 type II secretion system F family protein Machinery gene
  KIP84_RS16940 (KIP84_16945) pilD 3532437..3533297 (+) 861 WP_002114758.1 A24 family peptidase Machinery gene
  KIP84_RS16945 (KIP84_16950) coaE 3533299..3533895 (+) 597 WP_032070755.1 dephospho-CoA kinase -
  KIP84_RS16950 (KIP84_16955) - 3533892..3534806 (-) 915 WP_174724350.1 DMT family transporter -
  KIP84_RS16955 (KIP84_16960) rlmB 3534842..3535591 (-) 750 WP_213688957.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KIP84_RS16960 (KIP84_16965) - 3535694..3536020 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  KIP84_RS16965 (KIP84_16970) - 3536097..3537407 (-) 1311 WP_213688958.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32168.70 Da        Isoelectric Point: 7.1044

>NTDB_id=568786 KIP84_RS16940 WP_002114758.1 3532437..3533297(+) (pilD) [Acinetobacter sp. BHS4]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=568786 KIP84_RS16940 WP_002114758.1 3532437..3533297(+) (pilD) [Acinetobacter sp. BHS4]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCACCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

96.503

100

0.965
  pilD Acinetobacter nosocomialis M2

96.154

100

0.962
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

53.309

95.105

0.507
  pilD Neisseria gonorrhoeae MS11

47.71

91.608

0.437