Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KI608_RS00105 Genome accession   NZ_CP075192
Coordinates   26438..27514 (-) Length   358 a.a.
NCBI ID   WP_226449501.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 132     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 21438..32514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI608_RS00085 (KI608_00085) - 21539..22009 (-) 471 WP_226451921.1 SRPBCC family protein -
  KI608_RS00090 (KI608_00090) - 22125..22832 (+) 708 WP_226449495.1 pseudouridine synthase -
  KI608_RS00095 (KI608_00095) - 22829..23743 (+) 915 WP_226449497.1 hydrogen peroxide-inducible genes activator -
  KI608_RS00100 (KI608_00100) - 23842..26361 (-) 2520 WP_226449499.1 DNA topoisomerase III -
  KI608_RS00105 (KI608_00105) dprA 26438..27514 (-) 1077 WP_226449501.1 DNA-processing protein DprA Machinery gene
  KI608_RS00110 (KI608_00110) - 27511..28542 (-) 1032 WP_226449503.1 LysM peptidoglycan-binding domain-containing protein -
  KI608_RS00115 (KI608_00115) def 28686..29189 (+) 504 WP_226449505.1 peptide deformylase -
  KI608_RS00120 (KI608_00120) fmt 29186..30109 (+) 924 WP_226449507.1 methionyl-tRNA formyltransferase -
  KI608_RS00125 (KI608_00125) htpX 30168..31010 (+) 843 WP_226449509.1 zinc metalloprotease HtpX -
  KI608_RS00130 (KI608_00130) - 31020..31370 (-) 351 WP_226449511.1 ribbon-helix-helix domain-containing protein -
  KI608_RS00135 (KI608_00135) - 31421..32002 (-) 582 WP_226449513.1 DJ-1/PfpI family protein -
  KI608_RS00140 (KI608_00140) speD 32102..32500 (-) 399 WP_226449515.1 adenosylmethionine decarboxylase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 37836.37 Da        Isoelectric Point: 5.1122

>NTDB_id=568591 KI608_RS00105 WP_226449501.1 26438..27514(-) (dprA) [Ferribacterium limneticum strain 132]
MINTDGLAAWLRLTLIPGIGGETQRKLLAAFGLPEAIFSAGRLEARGIIGHRADLLFDFDPTEAVEHSLEWANQPSQHII
SLADEAYPKALLEIADPPSLLYVRGNLALLQKRGLAMVGSRNATPQGVQTAENFAKTLAARGLTIISGLALGIDAAAHRG
ALAAKGETIAVIGTGPDRIYPARNKELALAIVEHGAIVSEFPLGTPAIASNFPRRNRIISGLSRGVLVVEAAPESGSLIT
ARLAAEQGREVFAIPGSIHSPVARGCHKLIKQGAKLVETATDILEELGSFNEAPEPELPSDNAEEGPILAALGHDPCSLD
DLVERTAMSADQLLPELLTLELCGLIGTLPGNRYQRLN

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=568591 KI608_RS00105 WP_226449501.1 26438..27514(-) (dprA) [Ferribacterium limneticum strain 132]
ATGATAAATACCGACGGCTTGGCCGCCTGGTTGCGGCTGACCCTGATTCCAGGCATTGGCGGCGAGACGCAACGAAAGCT
TCTCGCCGCTTTCGGTTTACCGGAAGCCATTTTCTCGGCCGGCCGCCTGGAAGCGCGTGGCATCATCGGTCACCGCGCCG
ACCTGCTGTTCGATTTTGATCCGACAGAGGCGGTCGAACATAGCCTCGAATGGGCCAACCAACCAAGTCAGCACATCATC
TCATTGGCTGATGAAGCCTACCCGAAAGCGCTGCTCGAAATAGCCGACCCTCCCAGCCTACTCTACGTGCGCGGCAACCT
TGCCCTGCTCCAGAAGCGCGGACTAGCCATGGTTGGCAGCCGCAACGCAACGCCTCAAGGTGTGCAAACGGCCGAGAACT
TCGCCAAAACACTGGCCGCCAGGGGGCTGACGATCATTAGTGGCCTGGCGCTAGGCATCGATGCCGCCGCCCACCGTGGC
GCACTGGCCGCCAAGGGAGAAACCATTGCGGTCATTGGCACCGGCCCCGACCGTATCTACCCGGCCCGCAATAAGGAGTT
GGCGCTGGCCATCGTTGAGCATGGGGCGATCGTTTCTGAATTTCCGCTCGGTACGCCCGCCATCGCCTCCAACTTTCCAA
GGCGCAACCGAATCATCTCCGGACTCTCGCGTGGTGTCTTGGTCGTCGAAGCTGCGCCGGAAAGCGGGTCGCTGATCACA
GCGCGGCTTGCCGCTGAACAGGGGCGTGAGGTTTTCGCCATACCCGGGTCGATCCACTCGCCCGTTGCCCGCGGCTGCCA
TAAATTGATCAAGCAGGGTGCCAAACTGGTTGAAACCGCTACCGACATTCTGGAAGAACTGGGCAGTTTCAACGAAGCTC
CCGAACCGGAGCTTCCATCAGATAACGCTGAAGAAGGTCCGATTCTCGCTGCGCTTGGCCACGATCCATGCAGCCTTGAC
GACCTCGTCGAACGAACTGCAATGAGCGCCGACCAGTTGCTGCCGGAACTCCTGACACTGGAGCTTTGCGGCCTTATAGG
CACCCTGCCCGGTAACCGCTACCAGCGCCTGAACTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(293-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis MC58

44.051

100

0.486
  dprA Neisseria meningitidis strain C311

44.051

100

0.486
  dprA Neisseria gonorrhoeae MS11

43.511

100

0.478
  dprA Neisseria gonorrhoeae strain FA1090

43.257

100

0.475
  dprA Vibrio campbellii strain DS40M4

43.836

100

0.447
  dprA Legionella pneumophila strain ERS1305867

43.466

98.324

0.427
  dprA Vibrio cholerae strain A1552

40.811

100

0.422
  dprA Haemophilus influenzae Rd KW20

42.73

94.134

0.402
  dprA Acinetobacter baylyi ADP1

39.216

99.721

0.391
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.216

99.721

0.391
  dprA Acinetobacter baumannii D1279779

40.237

94.413

0.38
  dprA Glaesserella parasuis strain SC1401

45.946

82.682

0.38