Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KI612_RS03590 Genome accession   NZ_CP075188
Coordinates   737232..738458 (-) Length   408 a.a.
NCBI ID   WP_226442471.1    Uniprot ID   -
Organism   Quatrionicoccus australiensis strain D9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 732232..743458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI612_RS03555 (KI612_03560) nudB 732380..732826 (-) 447 WP_226442465.1 dihydroneopterin triphosphate diphosphatase -
  KI612_RS03560 (KI612_03565) - 732823..733248 (-) 426 WP_226442466.1 barstar family protein -
  KI612_RS03565 (KI612_03570) - 733252..733614 (-) 363 WP_226442467.1 ribonuclease domain-containing protein -
  KI612_RS03570 (KI612_03575) aspS 733621..735420 (-) 1800 WP_226442468.1 aspartate--tRNA ligase -
  KI612_RS03575 (KI612_03580) - 735442..736056 (-) 615 WP_226444129.1 DUF502 domain-containing protein -
  KI612_RS03580 (KI612_03585) - 736056..736310 (-) 255 WP_226442469.1 zinc ribbon domain-containing protein -
  KI612_RS03585 (KI612_03590) pilD 736381..737232 (-) 852 WP_226442470.1 A24 family peptidase Machinery gene
  KI612_RS03590 (KI612_03595) pilC 737232..738458 (-) 1227 WP_226442471.1 type II secretion system F family protein Machinery gene
  KI612_RS03595 (KI612_03600) pilB 738474..740189 (-) 1716 WP_226442472.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KI612_RS03600 (KI612_03605) - 740277..741539 (-) 1263 WP_226442473.1 HlyC/CorC family transporter -
  KI612_RS03605 (KI612_03610) - 741545..742384 (-) 840 WP_226442474.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44637.61 Da        Isoelectric Point: 10.0340

>NTDB_id=568502 KI612_RS03590 WP_226442471.1 737232..738458(-) (pilC) [Quatrionicoccus australiensis strain D9]
MATAARPKARTVKESAFLWEGRNKDGKNVRGEIRAASETVVQTTLRRQGISNAKIKKVRFKSGGKITEKDIALFTRQLAT
MMRSGVPLLQAFDIVGRGHANPAVGKLLLDIKSDVETGSSLSQAFRKYPLQFDVLYCNLVSAGEQAGILDSLLERLATYK
EKILAIKSKIKAAMFYPIAVLVVAFIITAVIMLFVIPAFKEVFKNFGADLPAPTLVVIAVSDAFVAYWWAIFGILGGGFY
AFFESWKRSEKMQIVMDRLLLRMPVFGDIIRKSVIARWTRTLATMFAAGVPLVESLESVGGASGNYVYKLATRQIQSEVS
TGTSLTNAMQNVNIFPNMVTQMVSIGEESGALDSMLAKVADFFEQEVDDAVDAMSSLIEPMIMVVLGVLIGGMIIAMYLP
IFKLGAVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=568502 KI612_RS03590 WP_226442471.1 737232..738458(-) (pilC) [Quatrionicoccus australiensis strain D9]
ATGGCGACTGCCGCAAGGCCCAAGGCCAGGACCGTAAAGGAAAGCGCTTTCCTCTGGGAGGGCAGGAACAAGGATGGCAA
AAACGTGCGCGGCGAAATTCGTGCCGCCAGCGAGACTGTGGTCCAGACCACCTTGCGCCGCCAGGGCATTTCCAATGCCA
AGATCAAGAAGGTCCGCTTCAAGAGCGGTGGCAAGATCACCGAAAAGGACATCGCCCTTTTCACGCGCCAGCTGGCCACC
ATGATGCGCTCGGGTGTCCCGCTCCTGCAGGCCTTCGACATCGTCGGTCGCGGCCATGCCAACCCGGCGGTCGGTAAACT
CCTGCTCGATATCAAGTCCGATGTCGAAACCGGCAGTTCGCTGTCCCAGGCCTTCCGCAAATACCCGCTGCAATTTGACG
TTCTCTATTGCAACCTTGTTTCAGCCGGCGAGCAGGCAGGTATTCTTGACTCCCTGCTGGAGCGTCTCGCCACCTACAAG
GAAAAGATCCTCGCCATCAAGAGCAAGATCAAGGCGGCGATGTTCTACCCGATCGCGGTTCTGGTGGTTGCCTTCATTAT
CACTGCGGTCATCATGCTGTTCGTCATTCCGGCCTTCAAGGAAGTTTTCAAGAACTTCGGTGCAGATTTGCCGGCGCCCA
CCCTGGTGGTCATTGCCGTCTCGGATGCTTTTGTTGCCTATTGGTGGGCCATTTTCGGCATCCTCGGCGGCGGCTTCTAT
GCCTTCTTCGAAAGCTGGAAGCGTTCGGAAAAGATGCAAATCGTCATGGACCGCCTTCTGCTCCGCATGCCGGTCTTTGG
CGACATCATCCGCAAATCGGTTATTGCCCGCTGGACACGCACCTTGGCCACCATGTTTGCGGCAGGCGTGCCGCTGGTCG
AATCGCTGGAGTCGGTTGGCGGCGCGTCCGGAAATTATGTCTACAAACTCGCCACCCGGCAGATCCAGAGCGAGGTTTCG
ACCGGCACCAGCCTGACCAACGCCATGCAGAACGTCAATATTTTCCCCAACATGGTGACCCAGATGGTTTCCATCGGTGA
AGAATCCGGAGCTCTGGACTCCATGCTGGCAAAGGTTGCCGACTTTTTTGAACAGGAAGTCGATGATGCGGTAGACGCCA
TGTCCAGCCTGATCGAACCGATGATCATGGTTGTCCTCGGCGTATTGATCGGCGGCATGATCATTGCCATGTATCTGCCG
ATCTTCAAGCTGGGCGCCGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.98

98.529

0.532
  pilC Legionella pneumophila strain ERS1305867

53.03

97.059

0.515
  pilG Neisseria gonorrhoeae MS11

52.141

97.304

0.507
  pilG Neisseria meningitidis 44/76-A

52.141

97.304

0.507
  pilC Acinetobacter baumannii D1279779

49.624

97.794

0.485
  pilC Acinetobacter baylyi ADP1

49.118

97.304

0.478
  pilC Vibrio cholerae strain A1552

39.95

98.775

0.395
  pilC Vibrio campbellii strain DS40M4

39.75

98.039

0.39
  pilC Thermus thermophilus HB27

37.75

98.039

0.37