Detailed information NTG0568501

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KI612_RS03585
• Genome accession: NZ_CP075188
• Coordinates: 736381..737232 (-)
• Length: 283 a.a.
• NCBI ID: WP_226442470.1
• Uniprot ID: -
• Organism: Quatrionicoccus australiensis strain D9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 731381..742232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI612_RS03550 (KI612_03555)	-	731868..732284 (-)	417	WP_226442464.1	Hsp20/alpha crystallin family protein	-
KI612_RS03555 (KI612_03560)	nudB	732380..732826 (-)	447	WP_226442465.1	dihydroneopterin triphosphate diphosphatase	-
KI612_RS03560 (KI612_03565)	-	732823..733248 (-)	426	WP_226442466.1	barstar family protein	-
KI612_RS03565 (KI612_03570)	-	733252..733614 (-)	363	WP_226442467.1	ribonuclease domain-containing protein	-
KI612_RS03570 (KI612_03575)	aspS	733621..735420 (-)	1800	WP_226442468.1	aspartate--tRNA ligase	-
KI612_RS03575 (KI612_03580)	-	735442..736056 (-)	615	WP_226444129.1	DUF502 domain-containing protein	-
KI612_RS03580 (KI612_03585)	-	736056..736310 (-)	255	WP_226442469.1	zinc ribbon domain-containing protein	-
KI612_RS03585 (KI612_03590)	pilD	736381..737232 (-)	852	WP_226442470.1	A24 family peptidase	Machinery gene
KI612_RS03590 (KI612_03595)	pilC	737232..738458 (-)	1227	WP_226442471.1	type II secretion system F family protein	Machinery gene
KI612_RS03595 (KI612_03600)	pilB	738474..740189 (-)	1716	WP_226442472.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KI612_RS03600 (KI612_03605)	-	740277..741539 (-)	1263	WP_226442473.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30263.03 Da
• Isoelectric Point: 6.6836

>NTDB_id=568501 KI612_RS03585 WP_226442470.1 736381..737232(-) (pilD) [Quatrionicoccus australiensis strain D9]
MLPESLTGLAVMAGLLGLCIGSFLNVVIYRLPKMMEREWQVQCAELRGETLPDEEPLTLAKPGSRCPACGHRISALENIP
IISYLLILKGKCAGCSAPISARYPVIEALTALLSAYTVWHFGPTIQAAGALLLVWALISLAMIDFDTQLLPDAITLPLLW
LGLAFNLGTTYTDLATSVIGAMAGYLALWSVFWLFKLATGKEGMGYGDFKLLAALGAWLGWQMLPTIILLSSVVGASVGI
ALIVFGRHGRNIPIPFGPYLAAAGGIALFWGPALTERYLGLLS

Nucleotide

• Length: 852 bp

>NTDB_id=568501 KI612_RS03585 WP_226442470.1 736381..737232(-) (pilD) [Quatrionicoccus australiensis strain D9]
ATGCTTCCCGAGTCACTGACAGGCCTGGCTGTTATGGCCGGGCTGCTCGGCTTGTGCATCGGCAGCTTCCTCAACGTGGT
GATTTACCGCCTGCCGAAGATGATGGAGCGCGAATGGCAGGTTCAGTGCGCCGAACTCAGGGGAGAAACACTGCCGGATG
AAGAGCCCCTGACCCTGGCCAAACCTGGTTCGCGCTGCCCGGCCTGCGGCCATCGGATATCGGCCCTGGAAAACATCCCG
ATCATCAGCTACCTGCTGATTCTCAAGGGCAAATGCGCCGGCTGCAGCGCTCCGATCTCGGCGCGTTATCCGGTCATCGA
AGCCCTGACCGCACTGCTCTCCGCCTACACCGTCTGGCATTTCGGCCCGACCATCCAGGCCGCAGGTGCCTTGTTGCTGG
TCTGGGCATTGATTTCCCTGGCGATGATCGACTTCGACACCCAACTGCTCCCCGACGCCATCACCCTGCCACTGCTATGG
CTAGGCCTGGCCTTCAACCTGGGGACAACCTATACCGATCTCGCAACTTCGGTGATTGGTGCCATGGCAGGCTACCTCGC
GCTGTGGTCGGTATTCTGGCTGTTCAAGCTGGCGACTGGAAAAGAAGGCATGGGTTACGGCGATTTCAAACTGCTGGCAG
CACTCGGCGCCTGGCTCGGCTGGCAGATGCTGCCAACCATCATCCTGCTCTCCTCCGTCGTTGGCGCAAGCGTCGGTATC
GCACTGATCGTCTTCGGGCGTCATGGCCGCAACATCCCCATCCCCTTCGGCCCCTACCTGGCGGCCGCCGGTGGCATCGC
GCTGTTCTGGGGACCGGCACTTACCGAACGCTATCTCGGACTGCTCTCTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-121)

• Type IV leader peptidase family (Peptidase_A24) (131-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.618	96.113	0.544
pilD	Acinetobacter baumannii D1279779	55.197	98.587	0.544
pilD	Acinetobacter nosocomialis M2	54.839	98.587	0.541
pilD	Vibrio campbellii strain DS40M4	55.474	96.82	0.537
pilD	Neisseria gonorrhoeae MS11	51.55	91.166	0.47