Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KI614_RS03240 Genome accession   NZ_CP075187
Coordinates   681232..682458 (-) Length   408 a.a.
NCBI ID   WP_226407846.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 98     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 676232..687458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI614_RS03205 (KI614_03205) nudB 676384..676836 (-) 453 WP_226407834.1 dihydroneopterin triphosphate diphosphatase -
  KI614_RS03210 (KI614_03210) - 676833..677261 (-) 429 WP_226407836.1 barstar family protein -
  KI614_RS03215 (KI614_03215) - 677265..677621 (-) 357 WP_226407838.1 ribonuclease domain-containing protein -
  KI614_RS03220 (KI614_03220) aspS 677628..679427 (-) 1800 WP_226407840.1 aspartate--tRNA ligase -
  KI614_RS03225 (KI614_03225) - 679445..680059 (-) 615 WP_203469305.1 DUF502 domain-containing protein -
  KI614_RS03230 (KI614_03230) - 680059..680313 (-) 255 WP_226407842.1 FmdB family zinc ribbon protein -
  KI614_RS03235 (KI614_03235) pilD 680384..681232 (-) 849 WP_226407844.1 prepilin peptidase Machinery gene
  KI614_RS03240 (KI614_03240) pilC 681232..682458 (-) 1227 WP_226407846.1 type II secretion system F family protein Machinery gene
  KI614_RS03245 (KI614_03245) pilB 682474..684189 (-) 1716 WP_226407848.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KI614_RS03250 (KI614_03250) - 684268..685539 (-) 1272 WP_226407851.1 HlyC/CorC family transporter -
  KI614_RS03255 (KI614_03255) - 685543..686382 (-) 840 WP_226407853.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44339.16 Da        Isoelectric Point: 9.9897

>NTDB_id=568480 KI614_RS03240 WP_226407846.1 681232..682458(-) (pilC) [Dechloromonas denitrificans strain 98]
MATAAKPKASAVKESPFLWEGKNRDGKTVRGEMRAASESVVQTTLRRQGITNAKIKKVRFKSGGRITGKDIALFTRQLAT
MMKSGVPLLQSFDIVGRGHTNPAVGKLLLDIKADVETGSSLSQAFRKYPLQFDPLYCNLVAAGEQAGILDSLLDRLATYQ
EKIIAIKSKIKSALFYPIAVIVVAFIITAVIMIFVIPAFKDVFKSFGADLPAPTLVVISISDFFVAYWWAIFGILGGGIY
GFLESWRRSEKIQIVMDRLLLRAPVFGEIVRKSVIARWTRTLATMFAAGVPLVESLESVGGAAGNHVYKIATKQIQSEVS
TGTSLTSAMQNVNIFPNMVTQMVAIGEESGALDSMLSKVADFFEQEVDDAVEAMSSLMEPIIMVVLGTLIGGMVVSMYLP
IFKMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=568480 KI614_RS03240 WP_226407846.1 681232..682458(-) (pilC) [Dechloromonas denitrificans strain 98]
ATGGCTACCGCCGCCAAACCGAAAGCCTCGGCAGTCAAGGAGTCCCCTTTTTTATGGGAAGGCAAGAACCGGGACGGAAA
AACCGTGCGCGGAGAAATGCGCGCAGCTAGCGAGTCGGTTGTCCAGACCACGCTGAGACGCCAAGGCATCACGAATGCCA
AGATCAAAAAAGTCCGCTTCAAAAGTGGCGGCCGGATTACTGGCAAGGATATCGCGCTATTTACTCGGCAACTGGCGACC
ATGATGAAGTCAGGCGTCCCCCTGCTTCAGTCATTTGATATTGTCGGAAGAGGGCACACCAATCCAGCGGTTGGCAAATT
GCTGCTCGACATTAAAGCAGATGTCGAAACGGGCAGCTCACTGTCACAAGCCTTTCGCAAGTATCCACTCCAATTCGATC
CGCTCTACTGCAACCTAGTTGCAGCGGGCGAACAGGCTGGGATTCTTGACAGTCTTCTCGACCGCTTGGCGACCTACCAG
GAAAAAATTATCGCGATCAAGAGCAAGATCAAGTCAGCCTTGTTCTATCCGATCGCAGTCATAGTCGTGGCATTCATTAT
TACTGCCGTGATTATGATTTTCGTCATTCCAGCATTTAAAGACGTTTTCAAAAGCTTCGGCGCAGACTTGCCGGCCCCTA
CGCTGGTCGTGATCTCCATTTCCGACTTTTTCGTTGCTTATTGGTGGGCAATATTCGGCATACTGGGTGGAGGAATTTAT
GGATTCCTGGAAAGCTGGCGCCGCTCCGAAAAAATCCAGATCGTCATGGACCGCCTGCTTTTACGCGCACCGGTTTTCGG
GGAAATTGTCCGAAAATCGGTCATTGCCCGGTGGACCAGAACGTTGGCAACCATGTTTGCTGCAGGCGTTCCCTTGGTTG
AGTCGCTCGAGTCGGTCGGTGGAGCAGCCGGGAATCATGTGTATAAAATTGCAACGAAACAAATTCAAAGTGAAGTCTCG
ACAGGCACCAGCCTGACTTCTGCGATGCAGAACGTGAACATTTTCCCGAACATGGTGACCCAGATGGTTGCGATCGGCGA
AGAATCTGGTGCGCTTGACTCGATGCTTTCCAAGGTCGCCGACTTCTTCGAACAGGAAGTCGATGATGCAGTCGAGGCCA
TGTCCAGCCTGATGGAGCCGATAATCATGGTTGTTCTCGGCACGCTGATTGGCGGCATGGTTGTATCCATGTACCTGCCC
ATTTTCAAGATGGGCTCAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.865

98.284

0.529
  pilC Legionella pneumophila strain ERS1305867

52.97

99.02

0.525
  pilG Neisseria gonorrhoeae MS11

53.383

97.794

0.522
  pilG Neisseria meningitidis 44/76-A

52.882

97.794

0.517
  pilC Acinetobacter baumannii D1279779

50.877

97.794

0.498
  pilC Acinetobacter baylyi ADP1

50.882

97.304

0.495
  pilC Vibrio cholerae strain A1552

40.909

97.059

0.397
  pilC Vibrio campbellii strain DS40M4

39.447

97.549

0.385
  pilC Thermus thermophilus HB27

37.288

100

0.377