Detailed information NTG0568479

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KI614_RS03235
• Genome accession: NZ_CP075187
• Coordinates: 680384..681232 (-)
• Length: 282 a.a.
• NCBI ID: WP_226407844.1
• Uniprot ID: -
• Organism: Dechloromonas denitrificans strain 98
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 675384..686232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI614_RS03200 (KI614_03200)	argB	675431..676318 (-)	888	WP_226407832.1	acetylglutamate kinase	-
KI614_RS03205 (KI614_03205)	nudB	676384..676836 (-)	453	WP_226407834.1	dihydroneopterin triphosphate diphosphatase	-
KI614_RS03210 (KI614_03210)	-	676833..677261 (-)	429	WP_226407836.1	barstar family protein	-
KI614_RS03215 (KI614_03215)	-	677265..677621 (-)	357	WP_226407838.1	ribonuclease domain-containing protein	-
KI614_RS03220 (KI614_03220)	aspS	677628..679427 (-)	1800	WP_226407840.1	aspartate--tRNA ligase	-
KI614_RS03225 (KI614_03225)	-	679445..680059 (-)	615	WP_203469305.1	DUF502 domain-containing protein	-
KI614_RS03230 (KI614_03230)	-	680059..680313 (-)	255	WP_226407842.1	FmdB family zinc ribbon protein	-
KI614_RS03235 (KI614_03235)	pilD	680384..681232 (-)	849	WP_226407844.1	prepilin peptidase	Machinery gene
KI614_RS03240 (KI614_03240)	pilC	681232..682458 (-)	1227	WP_226407846.1	type II secretion system F family protein	Machinery gene
KI614_RS03245 (KI614_03245)	pilB	682474..684189 (-)	1716	WP_226407848.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KI614_RS03250 (KI614_03250)	-	684268..685539 (-)	1272	WP_226407851.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 282 a.a.
• Molecular weight: 30180.99 Da
• Isoelectric Point: 8.1063

>NTDB_id=568479 KI614_RS03235 WP_226407844.1 680384..681232(-) (pilD) [Dechloromonas denitrificans strain 98]
MLPDSLVVLVGMAAVLGLCIGSFLNVVIHRLPKMMEHDWHAQCADLQGKPVSTGKTLSLSKPGSRCPACGHCITASQNIP
VISYLLLKGKCASCHTKISIRYPVIEFITGALSAFAVWHFGPSLQALGALFLIWMLIGLAAIDFDTQLLPDSMTLPLLWC
GLALNITGTFTDLPSAVIGAMAGYLALWSVFWLFKLATGKEGMGYGDFKLLAALGAWLGWQMLPTIILLSSVVGAGVGIT
LIIAARHGRNVPIPFGPYLAAAGGIALFWGTELTHRYLELIY

Nucleotide

• Length: 849 bp

>NTDB_id=568479 KI614_RS03235 WP_226407844.1 680384..681232(-) (pilD) [Dechloromonas denitrificans strain 98]
ATGCTTCCTGACTCACTTGTTGTTCTTGTCGGTATGGCGGCCGTATTGGGTCTGTGTATCGGCAGCTTCCTTAACGTCGT
GATTCACCGACTCCCCAAGATGATGGAGCACGATTGGCACGCACAGTGTGCCGATTTGCAGGGGAAACCAGTGTCGACCG
GGAAAACGCTCAGTTTGTCAAAACCAGGCTCCCGTTGCCCGGCCTGCGGTCATTGCATTACGGCCAGTCAAAACATTCCG
GTTATCAGCTATCTGTTGCTCAAAGGAAAGTGCGCGTCCTGCCACACGAAAATCTCGATTCGCTATCCTGTTATTGAATT
CATCACCGGAGCCCTTTCCGCCTTCGCGGTTTGGCACTTCGGCCCCAGCCTGCAGGCTCTGGGGGCTCTGTTTCTGATCT
GGATGCTGATCGGGCTGGCCGCGATCGACTTTGATACACAACTGCTTCCTGATTCAATGACGCTTCCGCTGCTCTGGTGC
GGACTGGCGCTGAATATCACAGGCACATTCACTGATCTGCCATCTGCCGTCATTGGCGCCATGGCTGGCTACCTGGCTCT
CTGGTCTGTTTTCTGGCTATTCAAGCTGGCGACCGGCAAAGAAGGAATGGGATATGGCGACTTCAAACTGCTCGCCGCCC
TCGGTGCTTGGCTTGGCTGGCAGATGCTGCCGACCATCATTCTTCTCTCCTCCGTGGTTGGCGCCGGCGTCGGCATTACC
TTGATCATTGCAGCACGACATGGACGTAACGTCCCCATCCCATTCGGCCCTTACCTGGCCGCGGCTGGCGGCATCGCCCT
GTTTTGGGGAACGGAGTTGACACACCGTTACCTTGAACTGATCTATTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-120)

• Type IV leader peptidase family (Peptidase_A24) (130-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.069	98.227	0.521
pilD	Acinetobacter baumannii D1279779	53.069	98.227	0.521
pilD	Vibrio cholerae strain A1552	53.875	96.099	0.518
pilD	Acinetobacter nosocomialis M2	52.708	98.227	0.518
pilD	Neisseria gonorrhoeae MS11	53.488	91.489	0.489