Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KIP81_RS00785 Genome accession   NZ_CP075172
Coordinates   115297..115692 (+) Length   131 a.a.
NCBI ID   WP_074581909.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 110297..120692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS00750 (KIP81_00750) - 110441..111076 (+) 636 WP_074630166.1 type II CAAX endopeptidase family protein -
  KIP81_RS00755 (KIP81_00755) proC 111128..111898 (-) 771 WP_045798324.1 pyrroline-5-carboxylate reductase -
  KIP81_RS00760 (KIP81_00760) pepA 111960..113027 (-) 1068 WP_074566991.1 glutamyl aminopeptidase -
  KIP81_RS00765 (KIP81_00765) - 113144..113437 (+) 294 WP_027968030.1 DUF4651 domain-containing protein -
  KIP81_RS00770 (KIP81_00770) - 113430..113747 (+) 318 WP_021141448.1 thioredoxin family protein -
  KIP81_RS00775 (KIP81_00775) ytpR 113756..114382 (+) 627 WP_243602945.1 YtpR family tRNA-binding protein -
  KIP81_RS00780 (KIP81_00780) - 114469..115185 (-) 717 WP_243602946.1 class I SAM-dependent methyltransferase -
  KIP81_RS00785 (KIP81_00785) ssbA 115297..115692 (+) 396 WP_074581909.1 single-stranded DNA-binding protein Machinery gene
  KIP81_RS00790 (KIP81_00790) - 115872..116672 (+) 801 WP_243602947.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14847.84 Da        Isoelectric Point: 5.7866

>NTDB_id=568227 KIP81_RS00785 WP_074581909.1 115297..115692(+) (ssbA) [Streptococcus equinus strain SheepZ001]
MYNKVIMIGRLTAQPELVTTANDKSVTRVTLAVNRRFKSQNGEREADFISVVVWGRLAETLVSYAGKGSLISIDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=568227 KIP81_RS00785 WP_074581909.1 115297..115692(+) (ssbA) [Streptococcus equinus strain SheepZ001]
ATGTACAATAAAGTAATTATGATTGGGCGCTTGACGGCGCAACCTGAACTTGTGACGACAGCTAACGATAAAAGTGTTAC
ACGTGTAACACTTGCGGTCAATCGACGTTTTAAATCGCAAAATGGTGAGCGTGAAGCTGATTTTATTTCAGTTGTGGTAT
GGGGACGTTTGGCAGAAACACTTGTTTCCTATGCTGGAAAAGGAAGTCTGATTTCGATTGATGGCGAACTTCGCACACGC
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGTCATTCTTTCCAACTTTTAGAAAGCCGTGCACA
ACGTGCTATGCGAGAAAATAATGTGGCAAATGATTTGGCAGATTTAGTTCTGGAAGAGGAGGAATTGCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae R6

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae Rx1

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae D39

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.863

100

0.779
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

77.099

100

0.771
  ssbB/cilA Streptococcus mitis SK321

77.099

100

0.771
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397