Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AVAEIV_RS00100 Genome accession   NZ_CP092752
Coordinates   21461..22561 (+) Length   366 a.a.
NCBI ID   WP_061290474.1    Uniprot ID   -
Organism   Azotobacter vinelandii strain AEIV     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 16461..27561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVAEIV_RS00080 (AVAEIV_000016) rsmB 17383..18708 (-) 1326 WP_175555884.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AVAEIV_RS00085 (AVAEIV_000017) fmt 18711..19655 (-) 945 WP_302227814.1 methionyl-tRNA formyltransferase -
  AVAEIV_RS00090 (AVAEIV_000018) def 19712..20218 (-) 507 WP_012698713.1 peptide deformylase -
  AVAEIV_RS00095 (AVAEIV_000019) - 20370..21395 (+) 1026 WP_302227816.1 LysM peptidoglycan-binding domain-containing protein -
  AVAEIV_RS00100 (AVAEIV_000020) dprA 21461..22561 (+) 1101 WP_061290474.1 DNA-processing protein DprA Machinery gene
  AVAEIV_RS00105 (AVAEIV_000021) - 22622..23179 (+) 558 WP_012698716.1 L-threonylcarbamoyladenylate synthase -
  AVAEIV_RS00110 (AVAEIV_000022) - 23445..24422 (-) 978 WP_012698717.1 NADPH:quinone reductase -
  AVAEIV_RS00115 (AVAEIV_000023) hemF 24589..25506 (+) 918 WP_175555882.1 oxygen-dependent coproporphyrinogen oxidase -
  AVAEIV_RS00120 (AVAEIV_000024) aroE 25583..26395 (+) 813 WP_302227819.1 shikimate dehydrogenase -
  AVAEIV_RS00125 (AVAEIV_000025) - 26402..26734 (-) 333 WP_012698720.1 DUF883 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38316.10 Da        Isoelectric Point: 8.8988

>NTDB_id=568079 AVAEIV_RS00100 WP_061290474.1 21461..22561(+) (dprA) [Azotobacter vinelandii strain AEIV]
MPLSPAELEARLRLHALPGFGPRRHRRLLEAFASASAALSAPAAAWRALGLPAACAEARRSAAVRQQAAQALAWLEKPRR
HLLPLGEPDYPALLAELDDAPPLLFVEGDAAILERPQLAMVGSRRASKPGLDTARAFARQLAGAGFIVTSGLALGIDGAA
HRGALDAGGRTVAVLGTGLRRLYPARHETLAAEILEGGGALLSELPLDCPPQAGNFPRRNRIVSGLSLGVLVVEAGPSSG
SLITARLAAEQGREVYAIPGSIHHPGARGCHRLIRDGAILVESIEHILEALRGWQNLAPPPRSQAGPAPLDARHPLLALL
HAAPQTSEELALASGWPLARVLAALTELELDGKVAREGGRWQGCAG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=568079 AVAEIV_RS00100 WP_061290474.1 21461..22561(+) (dprA) [Azotobacter vinelandii strain AEIV]
ATGCCCCTTTCTCCCGCCGAACTGGAGGCGCGCCTGCGCCTGCACGCCCTGCCCGGCTTCGGACCGCGCCGCCATCGCCG
TCTGCTCGAGGCCTTCGCCAGCGCCTCGGCGGCGCTCAGTGCGCCGGCCGCCGCCTGGCGCGCGTTGGGGCTGCCGGCCG
CTTGCGCGGAGGCGCGGCGCAGCGCCGCGGTCCGCCAGCAGGCCGCGCAGGCGCTGGCCTGGCTGGAGAAGCCACGGCGG
CACCTGCTGCCACTCGGCGAGCCCGACTATCCGGCCCTGCTCGCCGAACTGGACGATGCTCCGCCGCTGCTCTTCGTCGA
AGGCGATGCGGCCATTCTGGAGCGGCCGCAACTGGCCATGGTCGGCAGCCGGCGCGCCTCGAAGCCCGGGCTCGACACCG
CCCGCGCCTTCGCCCGGCAGCTCGCCGGCGCCGGTTTCATCGTCACCAGCGGACTGGCCCTGGGTATCGATGGCGCCGCC
CACCGGGGCGCGCTGGATGCCGGCGGACGGACGGTGGCCGTGCTCGGCACGGGCCTGCGGCGCCTCTATCCGGCGCGCCA
CGAAACCCTGGCGGCGGAGATCCTCGAAGGCGGCGGCGCGCTGCTATCCGAACTGCCGCTGGACTGTCCGCCCCAGGCGG
GCAACTTCCCGCGCCGCAACCGTATCGTCAGCGGCCTGTCCCTCGGCGTCCTGGTGGTCGAGGCCGGCCCTTCCAGCGGC
TCGCTGATCACCGCCCGGCTGGCCGCCGAGCAGGGTCGCGAGGTCTATGCGATTCCCGGCTCCATCCACCATCCCGGCGC
CCGTGGCTGCCATCGGCTGATTCGCGACGGTGCCATTCTGGTGGAAAGCATCGAGCACATCCTCGAAGCGCTGCGCGGCT
GGCAGAACCTGGCGCCGCCGCCCCGCTCGCAGGCCGGTCCGGCTCCGCTCGACGCGCGGCATCCACTGCTGGCGCTGCTG
CATGCCGCGCCGCAGACCAGCGAGGAGCTGGCCCTGGCCAGCGGCTGGCCGCTCGCCCGGGTACTGGCGGCACTCACCGA
ACTGGAGCTGGACGGTAAGGTGGCCCGCGAAGGCGGACGCTGGCAGGGATGCGCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-282)

DprA winged helix domain (WHD_DprA)

(300-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

44.384

99.727

0.443
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

45.455

90.164

0.41
  dprA Vibrio cholerae strain A1552

45.455

90.164

0.41
  dprA Acinetobacter baylyi ADP1

40.65

100

0.41
  dprA Legionella pneumophila strain ERS1305867

41.226

98.087

0.404
  dprA Acinetobacter baumannii D1279779

40.278

98.361

0.396
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.665

97.814

0.388
  dprA Acinetobacter baumannii strain A118

39.444

98.361

0.388
  dprA Neisseria meningitidis MC58

46.78

80.601

0.377
  dprA Neisseria meningitidis strain C311

46.78

80.601

0.377
  dprA Neisseria gonorrhoeae strain FA1090

46.102

80.601

0.372
  dprA Neisseria gonorrhoeae MS11

45.763

80.601

0.369