Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LILO_RS01880 | Genome accession | NC_020450 |
| Coordinates | 381466..381855 (+) | Length | 129 a.a. |
| NCBI ID | WP_015425843.1 | Uniprot ID | A0A443LH63 |
| Organism | Lactococcus lactis subsp. lactis IO-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 381466..384833 | 381466..381855 | within | 0 |
Gene organization within MGE regions
Location: 381466..384833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LILO_RS01880 (lilo_0355) | ssbB | 381466..381855 (+) | 390 | WP_015425843.1 | single-stranded DNA-binding protein | Machinery gene |
| LILO_RS01885 (lilo_0356) | groES | 381975..382259 (+) | 285 | WP_003131589.1 | co-chaperone GroES | - |
| LILO_RS01890 (lilo_0357) | groL | 382347..383975 (+) | 1629 | WP_015425845.1 | chaperonin GroEL | - |
| LILO_RS01895 (lilo_0358) | - | 384021..384833 (-) | 813 | WP_003131583.1 | MBL fold metallo-hydrolase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14656.74 Da Isoelectric Point: 8.3705
>NTDB_id=56459 LILO_RS01880 WP_015425843.1 381466..381855(+) (ssbB) [Lactococcus lactis subsp. lactis IO-1]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAVKVEETLLDAEELPF
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAVKVEETLLDAEELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=56459 LILO_RS01880 WP_015425843.1 381466..381855(+) (ssbB) [Lactococcus lactis subsp. lactis IO-1]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGCGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTGGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGGGAAAGCGCTGTAAAGGTTGAAGAAACCTTACTTGATGCGGAAGAACTCCCCTTCTAA
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGCGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTGGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGGGAAAGCGCTGTAAAGGTTGAAGAAACCTTACTTGATGCGGAAGAACTCCCCTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
90.698 |
100 |
0.907 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60.769 |
100 |
0.612 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.923 |
100 |
0.574 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
56.154 |
100 |
0.566 |
| ssbA | Streptococcus mutans UA159 |
56.154 |
100 |
0.566 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
43.75 |
86.822 |
0.38 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
44.762 |
81.395 |
0.364 |