Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KG087_RS04350 Genome accession   NZ_CP074379
Coordinates   877351..878592 (+) Length   413 a.a.
NCBI ID   WP_213449917.1    Uniprot ID   -
Organism   Lacticaseibacillus zeae strain FBL8     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 872351..883592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG087_RS04330 (KG087_04330) - 873442..874749 (+) 1308 WP_075761164.1 pitrilysin family protein -
  KG087_RS04335 (KG087_04335) - 874734..875462 (+) 729 WP_010489453.1 SDR family oxidoreductase -
  KG087_RS04340 (KG087_04340) - 875549..876487 (+) 939 WP_056945661.1 RodZ domain-containing protein -
  KG087_RS04345 (KG087_04345) pgsA 876484..877077 (+) 594 WP_010489451.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KG087_RS04350 (KG087_04350) cinA 877351..878592 (+) 1242 WP_213449917.1 competence/damage-inducible protein A Machinery gene
  KG087_RS04355 (KG087_04355) recA 878647..879633 (+) 987 Protein_833 recombinase RecA -
  KG087_RS04360 (KG087_04360) rny 880282..881853 (+) 1572 WP_010489446.1 ribonuclease Y -
  KG087_RS04365 (KG087_04365) - 881993..882646 (-) 654 WP_010489444.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44098.62 Da        Isoelectric Point: 6.8913

>NTDB_id=564489 KG087_RS04350 WP_213449917.1 877351..878592(+) (cinA) [Lacticaseibacillus zeae strain FBL8]
MQAEIIAVGTEILMGQITNTNGAYMAKQLAALGIASYHQQVVGDNAQRLADAISLAEKRSDIVILIGGLGPTPDDLTKQT
LAAHLKLPLVEDADAMAKLAARVKQQQRPMTPNNKLQAMYPQGADILVNRVGLAVGAWVEQHQHAYVLLPGPPKEFIPMV
DHELLPRLAKYSGHHEAFVSRVMRFFGVGESQLVTDLGDLIAKQTNPTLATYIKDHEVTIRVTASGETQADAEAKLEPAI
GAIMDREGRYFYGYGDDNSLAKELVKALAATDKQITAAESLTAGAFQAALGDVPGVSNYFKGGFVTYALATKAAFLNIDA
RKLAAHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDTLEGQPAGTVWIGLARMGQAPVAQVYHFPGGRNDVRKCAV
MTGMMIALKSLRD

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=564489 KG087_RS04350 WP_213449917.1 877351..878592(+) (cinA) [Lacticaseibacillus zeae strain FBL8]
ATGCAAGCAGAAATTATTGCTGTCGGAACTGAAATTCTGATGGGACAGATTACTAATACTAATGGCGCCTATATGGCTAA
ACAGTTGGCCGCTTTAGGCATTGCCAGCTATCATCAACAGGTTGTCGGTGACAATGCGCAGCGCCTGGCTGATGCGATCA
GCTTAGCCGAAAAACGCAGTGACATTGTGATTTTGATCGGTGGTTTAGGACCCACGCCAGATGACCTGACGAAACAAACG
TTGGCGGCTCATCTGAAATTGCCGTTGGTTGAAGATGCGGATGCCATGGCAAAACTGGCGGCGCGGGTAAAACAACAGCA
ACGGCCAATGACGCCAAATAATAAGTTACAGGCGATGTATCCGCAAGGTGCTGATATATTGGTTAATCGTGTCGGGCTGG
CAGTCGGTGCCTGGGTCGAACAACACCAACATGCCTATGTACTACTGCCTGGGCCGCCTAAGGAATTTATCCCAATGGTT
GATCATGAGCTATTACCTCGTTTGGCCAAGTATAGCGGCCACCATGAAGCTTTTGTCAGCCGCGTGATGCGCTTCTTTGG
CGTTGGTGAATCACAACTGGTGACGGATTTGGGTGACTTGATTGCCAAGCAAACGAATCCGACATTAGCCACTTACATCA
AGGACCATGAGGTGACCATTCGGGTGACAGCTAGCGGTGAGACCCAAGCAGACGCTGAAGCAAAATTGGAACCGGCGATT
GGCGCCATTATGGATCGCGAGGGACGTTACTTTTATGGTTATGGTGACGATAATAGCCTCGCTAAAGAGTTGGTCAAGGC
ATTAGCAGCGACTGACAAGCAAATAACGGCAGCGGAGAGTTTGACGGCCGGCGCATTTCAGGCAGCTTTGGGAGATGTGC
CTGGCGTCTCGAATTATTTCAAAGGTGGCTTCGTGACGTATGCATTAGCCACTAAAGCAGCATTTTTGAACATTGATGCC
CGCAAATTAGCGGCTCATGGGGTAGTGAGTGAATTTACCGCCAAAGCGATGGCCGAGCATGCCCGTCAGCGGGCTGCGGC
CGATATTGCAGTCAGTTTTACCGGCGTGGCCGGGCCCGACACACTGGAAGGACAGCCAGCGGGGACAGTTTGGATCGGCT
TGGCGAGGATGGGCCAGGCGCCGGTTGCACAGGTTTATCATTTTCCCGGTGGCCGCAATGATGTGCGCAAATGCGCGGTT
ATGACCGGCATGATGATCGCATTGAAGAGCTTGCGGGATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.831

100

0.518
  cinA Streptococcus mitis NCTC 12261

50.831

100

0.518
  cinA Streptococcus pneumoniae TIGR4

50.119

100

0.511
  cinA Streptococcus mutans UA159

50.966

100

0.511
  cinA Streptococcus pneumoniae Rx1

49.644

100

0.506
  cinA Streptococcus pneumoniae R6

49.644

100

0.506
  cinA Streptococcus pneumoniae D39

49.406

100

0.504
  cinA Bacillus subtilis subsp. subtilis str. 168

44.526

99.516

0.443
  cinA Streptococcus suis isolate S10

42.147

92.494

0.39