Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KFZ68_RS01945 Genome accession   NZ_CP074084
Coordinates   391367..392593 (-) Length   408 a.a.
NCBI ID   WP_284647936.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd1411     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386367..397593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ68_RS01920 (KFZ68_01920) mutT 388212..388619 (-) 408 WP_069530749.1 8-oxo-dGTP diphosphatase MutT -
  KFZ68_RS01925 (KFZ68_01925) yacG 388679..388888 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  KFZ68_RS01930 (KFZ68_01930) zapD 388897..389634 (-) 738 WP_005297594.1 cell division protein ZapD -
  KFZ68_RS01935 (KFZ68_01935) coaE 389702..390304 (-) 603 WP_068945536.1 dephospho-CoA kinase -
  KFZ68_RS01940 (KFZ68_01940) pilD 390306..391184 (-) 879 WP_284647935.1 A24 family peptidase Machinery gene
  KFZ68_RS01945 (KFZ68_01945) pilC 391367..392593 (-) 1227 WP_284647936.1 type II secretion system F family protein Machinery gene
  KFZ68_RS01950 (KFZ68_01950) pilB 392659..394350 (-) 1692 WP_284647937.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KFZ68_RS01955 (KFZ68_01955) pilA 394350..394745 (-) 396 WP_182079581.1 pilin Machinery gene
  KFZ68_RS01960 (KFZ68_01960) ampD 395131..395709 (+) 579 WP_086367527.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KFZ68_RS01965 (KFZ68_01965) pdhR 396069..396842 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45010.19 Da        Isoelectric Point: 10.0330

>NTDB_id=563088 KFZ68_RS01945 WP_284647936.1 391367..392593(-) (pilC) [Photobacterium damselae strain Pdd1411]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDLLINYGGYLAVGLLLVLVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=563088 KFZ68_RS01945 WP_284647936.1 391367..392593(-) (pilC) [Photobacterium damselae strain Pdd1411]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGAGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTACGAGCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ACCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACGGCCATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGTCATCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGCTCACCACTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCAGCTATTTTTGGCAGTTTTGGCGCAGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTATTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTGTACTTGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTCGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACCTTTAGTGCCGGTATTCCACTTCTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGTAACTTACATATAGAAGAAGCCATTATGGAAGCGCATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGCTACAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGATGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTGATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.25

98.039

0.542
  pilG Neisseria meningitidis 44/76-A

41.728

99.265

0.414
  pilG Neisseria gonorrhoeae MS11

41.728

99.265

0.414
  pilC Acinetobacter baumannii D1279779

40.441

100

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.049

99.755

0.4
  pilC Acinetobacter baylyi ADP1

39.547

97.304

0.385
  pilC Legionella pneumophila strain ERS1305867

37.94

97.549

0.37