Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KFZ68_RS01955 | Genome accession | NZ_CP074084 |
| Coordinates | 394350..394745 (-) | Length | 131 a.a. |
| NCBI ID | WP_182079581.1 | Uniprot ID | - |
| Organism | Photobacterium damselae strain Pdd1411 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 389350..399745
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFZ68_RS01935 (KFZ68_01935) | coaE | 389702..390304 (-) | 603 | WP_068945536.1 | dephospho-CoA kinase | - |
| KFZ68_RS01940 (KFZ68_01940) | pilD | 390306..391184 (-) | 879 | WP_284647935.1 | A24 family peptidase | Machinery gene |
| KFZ68_RS01945 (KFZ68_01945) | pilC | 391367..392593 (-) | 1227 | WP_284647936.1 | type II secretion system F family protein | Machinery gene |
| KFZ68_RS01950 (KFZ68_01950) | pilB | 392659..394350 (-) | 1692 | WP_284647937.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KFZ68_RS01955 (KFZ68_01955) | pilA | 394350..394745 (-) | 396 | WP_182079581.1 | pilin | Machinery gene |
| KFZ68_RS01960 (KFZ68_01960) | ampD | 395131..395709 (+) | 579 | WP_086367527.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| KFZ68_RS01965 (KFZ68_01965) | pdhR | 396069..396842 (+) | 774 | WP_005297609.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| KFZ68_RS01970 (KFZ68_01970) | aceE | 396923..399583 (+) | 2661 | WP_284647938.1 | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 13177.06 Da Isoelectric Point: 8.4687
>NTDB_id=563090 KFZ68_RS01955 WP_182079581.1 394350..394745(-) (pilA) [Photobacterium damselae strain Pdd1411]
MKGQKGFTLIELMIVVAVIGVLSAIAIPKYQQYVEKGALASALATATALKTNYEDYIAVSGAAPTTSAAIGATNFELGTV
TVTSGAIKVNVTKGGGSGSGVALERSSDSWACKVSASSDTIKLNGCTTNPS
MKGQKGFTLIELMIVVAVIGVLSAIAIPKYQQYVEKGALASALATATALKTNYEDYIAVSGAAPTTSAAIGATNFELGTV
TVTSGAIKVNVTKGGGSGSGVALERSSDSWACKVSASSDTIKLNGCTTNPS
Nucleotide
Download Length: 396 bp
>NTDB_id=563090 KFZ68_RS01955 WP_182079581.1 394350..394745(-) (pilA) [Photobacterium damselae strain Pdd1411]
ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATCGTAGTGGCGGTCATTGGTGTGTTATCGGCGATTGCAAT
TCCTAAATACCAACAATACGTAGAAAAAGGAGCATTAGCTTCTGCATTAGCTACTGCTACTGCATTAAAAACTAATTATG
AAGATTATATTGCTGTTAGCGGTGCAGCACCAACAACATCAGCAGCTATTGGCGCAACAAATTTTGAACTAGGTACAGTG
ACAGTCACATCTGGAGCTATTAAAGTTAATGTAACAAAAGGAGGTGGTTCAGGTAGTGGGGTAGCATTAGAAAGATCTTC
TGATTCATGGGCTTGTAAAGTAAGTGCTTCAAGTGACACCATTAAACTAAATGGTTGTACTACAAATCCAAGTTAA
ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATCGTAGTGGCGGTCATTGGTGTGTTATCGGCGATTGCAAT
TCCTAAATACCAACAATACGTAGAAAAAGGAGCATTAGCTTCTGCATTAGCTACTGCTACTGCATTAAAAACTAATTATG
AAGATTATATTGCTGTTAGCGGTGCAGCACCAACAACATCAGCAGCTATTGGCGCAACAAATTTTGAACTAGGTACAGTG
ACAGTCACATCTGGAGCTATTAAAGTTAATGTAACAAAAGGAGGTGGTTCAGGTAGTGGGGTAGCATTAGAAAGATCTTC
TGATTCATGGGCTTGTAAAGTAAGTGCTTCAAGTGACACCATTAAACTAAATGGTTGTACTACAAATCCAAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.887 |
100 |
0.519 |
| pilA | Vibrio cholerae strain A1552 |
47.887 |
100 |
0.519 |
| pilA | Vibrio cholerae C6706 |
47.887 |
100 |
0.519 |
| pilA | Acinetobacter baumannii strain A118 |
41.007 |
100 |
0.435 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.176 |
100 |
0.427 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.984 |
93.13 |
0.382 |