Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KFZ67_RS13965 Genome accession   NZ_CP074080
Coordinates   3026048..3027142 (-) Length   364 a.a.
NCBI ID   WP_284660307.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd0210     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3021048..3032142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ67_RS13935 (KFZ67_13895) hemF 3021562..3022473 (-) 912 WP_069531133.1 oxygen-dependent coproporphyrinogen oxidase -
  KFZ67_RS13940 (KFZ67_13900) - 3022477..3023034 (-) 558 WP_044178827.1 L-threonylcarbamoyladenylate synthase -
  KFZ67_RS13945 (KFZ67_13905) purE 3023227..3023712 (+) 486 WP_005302138.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  KFZ67_RS13950 (KFZ67_13910) - 3023715..3024836 (+) 1122 WP_284660305.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  KFZ67_RS13955 (KFZ67_13915) - 3024904..3025461 (-) 558 WP_284660306.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  KFZ67_RS13960 (KFZ67_13920) - 3025572..3026045 (-) 474 WP_036764597.1 DUF494 family protein -
  KFZ67_RS13965 (KFZ67_13925) dprA 3026048..3027142 (-) 1095 WP_284660307.1 DNA-processing protein DprA Machinery gene
  KFZ67_RS13970 (KFZ67_13930) - 3027145..3028203 (-) 1059 WP_284660308.1 LysM peptidoglycan-binding domain-containing protein -
  KFZ67_RS13975 (KFZ67_13935) def 3028492..3029004 (+) 513 WP_284660309.1 peptide deformylase -
  KFZ67_RS13980 (KFZ67_13940) fmt 3029017..3029961 (+) 945 WP_068945796.1 methionyl-tRNA formyltransferase -
  KFZ67_RS13985 (KFZ67_13945) rsmB 3030100..3031377 (+) 1278 WP_065171011.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39192.26 Da        Isoelectric Point: 6.4262

>NTDB_id=563076 KFZ67_RS13965 WP_284660307.1 3026048..3027142(-) (dprA) [Photobacterium damselae strain Pdd0210]
MDNIHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVAAIKHPDNKKIDLALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDSQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAVSIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAIPGSIYNPASRGCNALIKSGAKLVESAQDIFEEVGALTECAINHQLSQALPETENEQLPFPELLATVGSE
VIPVDVLAERSQMPVHDVMTQLLELELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=563076 KFZ67_RS13965 WP_284660307.1 3026048..3027142(-) (dprA) [Photobacterium damselae strain Pdd0210]
ATGGACAATATCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGCCACCGTATCAGTCGTTTATTACAACA
CGCAATGCCAGAGCAAATTATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTTGCCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTTGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTTTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGAGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTGGGCATCGATAGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACCATTGCCGTTTTAGGTTCCGGGCTGGAGCAGATTTATCCCGCATGCCACAAATCGTTAGCTGTAAG
TATTGTTGAGCAGGGTGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGAGCCCAATTTTTTCCACGTAGAAACC
GGATTATTAGCGGTTTATCTGTTGGAGTGTTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAGCAAGGCCGAGAGGTCTTTGCTATACCTGGTTCTATTTATAATCCCGCCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCAAGATATTTTCGAGGAGGTAGGCGCCCTAACAGAATGTGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCGAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCATGATGTCATGACGCAATTATTAGAATTAGAATT
GCTCGGATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.923

99.725

0.558
  dprA Vibrio cholerae strain A1552

51.587

100

0.536
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.489
  dprA Legionella pneumophila strain ERS1305867

43.631

100

0.442
  dprA Haemophilus influenzae Rd KW20

45.723

93.132

0.426
  dprA Neisseria meningitidis strain C311

44.237

88.187

0.39
  dprA Neisseria meningitidis MC58

44.237

88.187

0.39
  dprA Acinetobacter baumannii strain A118

42.901

89.011

0.382
  dprA Neisseria gonorrhoeae MS11

43.26

87.637

0.379
  dprA Neisseria gonorrhoeae strain FA1090

42.633

87.637

0.374
  dprA Acinetobacter baylyi ADP1

45.27

81.319

0.368