Detailed information NTG0560537

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: KFB96_RS12015
• Genome accession: NZ_CP073760
• Coordinates: 2663957..2665210 (+)
• Length: 417 a.a.
• NCBI ID: WP_213461620.1
• Uniprot ID: -
• Organism: MAG: Thiocapsa sp. isolate M50B4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2658957..2670210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFB96_RS12000 (KFB96_12000)	acs	2659285..2661231 (+)	1947	WP_213461613.1	acetate--CoA ligase	-
KFB96_RS12005 (KFB96_12005)	-	2661378..2662211 (+)	834	WP_213461615.1	NYN domain-containing protein	-
KFB96_RS12010 (KFB96_12010)	pilB	2662230..2663945 (+)	1716	WP_213461618.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KFB96_RS12015 (KFB96_12015)	pilC	2663957..2665210 (+)	1254	WP_213461620.1	type II secretion system F family protein	Machinery gene
KFB96_RS12020 (KFB96_12020)	pilD	2665382..2666260 (+)	879	WP_213461622.1	A24 family peptidase	Machinery gene
KFB96_RS12025 (KFB96_12025)	coaE	2666398..2667015 (+)	618	WP_213461624.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 417 a.a.
• Molecular weight: 45212.35 Da
• Isoelectric Point: 9.9820

>NTDB_id=560537 KFB96_RS12015 WP_213461620.1 2663957..2665210(+) (pilC) [MAG: Thiocapsa sp. isolate M50B4]
MATALKTKPKPKPKPQAEKAYVFTWEGRDRRGAKVTGETRSPSMTLVRADLRRQGVSPTKVKKKPQPLFSGKKKITSTDL
AIFSRQLATMMSAGVPLVQAFDIVGRGHENPAMQDLILGIKQDIESGTAMALAMGKYPLHFDDLVCNLVAAGEQAGVLDV
LLDKIATYKEKTESIKGKIKKAMFYPVAVIAVAIIVSAVLLIFVIPQFKDLFASFGADLPAFTLMVIGLSDALQKWWWAI
LLGLGAVGYVIGNTYKRSRALREAIDRTALKIPIIGPILNKAALARFARTLSTMFAAGVPLVEALDSVSGATGNIVYQNA
VLKMREEVATGQSLQLSMRQQDLFPHMVIQMTSIGEESGSLDDMLAKVADFYEEQVDNAVDSLSSLLEPLIMVVIGGLVG
SLIIAMYLPIFKLASVV

Nucleotide

• Length: 1254 bp

>NTDB_id=560537 KFB96_RS12015 WP_213461620.1 2663957..2665210(+) (pilC) [MAG: Thiocapsa sp. isolate M50B4]
ATGGCAACCGCACTCAAGACGAAGCCGAAACCCAAACCCAAACCGCAGGCCGAGAAGGCTTACGTCTTCACCTGGGAAGG
ACGCGACCGGCGCGGGGCCAAGGTGACGGGGGAGACCCGTTCGCCCAGCATGACACTGGTGCGGGCGGACCTACGACGGC
AAGGTGTGAGCCCGACCAAGGTCAAAAAAAAGCCCCAACCGCTCTTCAGCGGCAAGAAAAAGATCACCAGCACCGATCTC
GCCATCTTCAGCCGGCAGCTCGCGACCATGATGTCCGCCGGCGTGCCCTTGGTGCAGGCGTTCGACATCGTCGGACGCGG
TCACGAAAACCCGGCGATGCAGGACTTGATCCTGGGAATCAAGCAGGACATCGAGAGCGGCACCGCCATGGCGCTGGCGA
TGGGCAAGTATCCGCTCCACTTCGACGACCTGGTCTGCAACCTGGTGGCCGCCGGCGAGCAGGCGGGCGTACTGGACGTC
CTGCTCGACAAGATTGCGACCTACAAGGAAAAGACCGAGTCGATCAAGGGCAAGATCAAAAAGGCCATGTTCTATCCGGT
GGCGGTCATCGCGGTGGCCATCATCGTGAGCGCGGTTCTGCTCATCTTCGTCATCCCGCAGTTCAAGGACCTGTTCGCGA
GCTTCGGTGCGGATCTGCCCGCCTTCACGCTCATGGTGATCGGTCTTTCCGACGCGCTGCAGAAATGGTGGTGGGCGATC
CTCCTCGGGCTCGGCGCGGTCGGCTATGTCATCGGCAACACCTACAAACGCTCGCGCGCGTTGCGCGAAGCCATCGATCG
CACGGCCCTGAAGATCCCGATCATCGGGCCGATCCTCAACAAGGCCGCGCTCGCGCGTTTCGCCCGCACCCTGTCCACCA
TGTTCGCGGCCGGCGTCCCGCTGGTCGAGGCGCTGGATTCGGTCTCGGGCGCCACCGGCAACATCGTCTACCAGAACGCG
GTCTTGAAGATGCGCGAAGAGGTCGCGACCGGGCAATCGCTGCAACTGTCGATGCGCCAGCAAGACCTGTTCCCGCATAT
GGTCATTCAGATGACCTCCATCGGGGAGGAGTCGGGGTCGCTCGACGACATGCTCGCGAAGGTCGCCGACTTCTACGAGG
AGCAGGTCGACAACGCGGTCGACAGCCTCAGCAGCCTGCTCGAGCCACTGATCATGGTCGTGATCGGCGGCTTAGTCGGG
AGTCTGATCATCGCCATGTACCTGCCGATCTTCAAACTGGCCTCGGTCGTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	58.706	96.403	0.566
pilC	Legionella pneumophila strain ERS1305867	58.081	94.964	0.552
pilC	Acinetobacter baumannii D1279779	54.912	95.204	0.523
pilC	Acinetobacter baylyi ADP1	54.02	95.444	0.516
pilG	Neisseria meningitidis 44/76-A	46.517	96.403	0.448
pilG	Neisseria gonorrhoeae MS11	46.517	96.403	0.448
pilC	Vibrio campbellii strain DS40M4	42.462	95.444	0.405
pilC	Vibrio cholerae strain A1552	41.709	95.444	0.398
pilC	Thermus thermophilus HB27	38	95.923	0.365