Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KEM15_RS09140 Genome accession   NZ_CP073632
Coordinates   1781463..1781858 (-) Length   131 a.a.
NCBI ID   WP_274504326.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1776463..1786858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS09120 (KEM15_08980) rpsG 1777761..1778231 (-) 471 WP_105182784.1 30S ribosomal protein S7 -
  KEM15_RS09125 (KEM15_08985) rpsL 1778248..1778661 (-) 414 WP_002940030.1 30S ribosomal protein S12 -
  KEM15_RS09130 (KEM15_08990) groL 1778891..1780513 (-) 1623 WP_217374318.1 chaperonin GroEL -
  KEM15_RS09135 (KEM15_08995) groES 1780612..1780893 (-) 282 WP_217374319.1 co-chaperone GroES -
  KEM15_RS09140 (KEM15_09000) ssbA 1781463..1781858 (-) 396 WP_274504326.1 single-stranded DNA-binding protein Machinery gene
  KEM15_RS09145 - 1781924..1782163 (+) 240 WP_254451606.1 hypothetical protein -
  KEM15_RS09150 - 1782323..1782664 (+) 342 WP_254451607.1 DUF2785 domain-containing protein -
  KEM15_RS09155 (KEM15_09010) ytpR 1782697..1783320 (-) 624 WP_217374321.1 YtpR family tRNA-binding protein -
  KEM15_RS09160 (KEM15_09015) - 1783339..1784295 (-) 957 WP_217374322.1 DUF1002 domain-containing protein -
  KEM15_RS09165 (KEM15_09020) - 1784339..1784659 (-) 321 WP_217374323.1 thioredoxin family protein -
  KEM15_RS09170 (KEM15_09025) - 1784656..1784940 (-) 285 WP_171989715.1 DUF4651 domain-containing protein -
  KEM15_RS09175 (KEM15_09030) pepA 1785153..1786214 (+) 1062 WP_217374324.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14895.76 Da        Isoelectric Point: 5.7930

>NTDB_id=559533 KEM15_RS09140 WP_274504326.1 1781463..1781858(-) (ssbA) [Streptococcus parasuis strain NN1]
MYNKIIAIGRLTAQPELTQTPNGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHHVTEILGQSFQLLESRAQRAMRENNTNDDLANVILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=559533 KEM15_RS09140 WP_274504326.1 1781463..1781858(-) (ssbA) [Streptococcus parasuis strain NN1]
ATGTATAACAAAATCATTGCAATCGGTCGCTTGACGGCCCAACCGGAACTGACTCAAACGCCAAATGGCAAAAATCTGAC
TCGTGTCACAATTGCTGTGAACCGCCGTTTCAAGACAGAAAATGGCGAACGTGAGGCAGATTTTCTCAATGTTATTTTCT
GGGGAAAACTGGCGGAAACACTTGTCTCCTATGGCAGCAAGGGCAGTCTGATTTCTATTGACGGTGAGTTGCGGACGCGA
AAATACGAAAAAGACGGCAGCAACCACCATGTGACCGAAATCTTAGGTCAATCTTTCCAGCTACTCGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAATACGAATGATGATTTGGCGAATGTGATTTTGGAAGAGGAAGAATTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae D39

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae R6

68.702

100

0.687
  ssbB/cilA Streptococcus mitis NCTC 12261

68.702

100

0.687
  ssbB/cilA Streptococcus pneumoniae TIGR4

68.702

100

0.687
  ssbB/cilA Streptococcus mitis SK321

67.939

100

0.679
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374
  ssb Latilactobacillus sakei subsp. sakei 23K

42.478

86.26

0.366