Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KCL43_RS09820 Genome accession   NZ_CP073275
Coordinates   2046176..2046571 (-) Length   131 a.a.
NCBI ID   WP_043031577.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain IN-6992     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2041176..2051571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCL43_RS09800 (KCL43_09800) - 2041965..2042768 (-) 804 WP_012678666.1 ABC transporter ATP-binding protein -
  KCL43_RS09805 (KCL43_09805) - 2042777..2043661 (-) 885 WP_043030229.1 ABC transporter permease -
  KCL43_RS09810 (KCL43_09810) - 2043769..2044731 (-) 963 WP_111710883.1 ABC transporter substrate-binding protein -
  KCL43_RS09815 (KCL43_09815) - 2044749..2045723 (-) 975 WP_015898648.1 ABC transporter substrate-binding protein -
  KCL43_RS09820 (KCL43_09820) ssbA 2046176..2046571 (-) 396 WP_043031577.1 single-stranded DNA-binding protein Machinery gene
  KCL43_RS09825 (KCL43_09825) - 2046682..2047384 (+) 703 Protein_1891 class I SAM-dependent methyltransferase -
  KCL43_RS09830 (KCL43_09830) ytpR 2047681..2048307 (-) 627 WP_043037359.1 YtpR family tRNA-binding protein -
  KCL43_RS09835 (KCL43_09835) - 2048322..2048639 (-) 318 WP_012516420.1 thioredoxin family protein -
  KCL43_RS09840 (KCL43_09840) - 2048636..2048920 (-) 285 WP_021321209.1 DUF4651 domain-containing protein -
  KCL43_RS09845 (KCL43_09845) pepA 2049325..2050392 (+) 1068 WP_021321210.1 glutamyl aminopeptidase -
  KCL43_RS09850 (KCL43_09850) proC 2050476..2051249 (+) 774 WP_043031581.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14727.87 Da        Isoelectric Point: 8.9315

>NTDB_id=558807 KCL43_RS09820 WP_043031577.1 2046176..2046571(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
MYNKVILIGRLVAKPELTKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINAVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFATEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=558807 KCL43_RS09820 WP_043031577.1 2046176..2046571(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAACCAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTGGATTTTATCAATGCTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGTAAGGGGAGTCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCGGGTCAGACTCATTTTGCGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

43.59

89.313

0.389