Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KCV10_RS05655 Genome accession   NZ_CP073243
Coordinates   1235731..1236957 (+) Length   408 a.a.
NCBI ID   WP_019456773.1    Uniprot ID   A0A7H2PQF8
Organism   Acinetobacter seifertii strain S63-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230731..1241957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS05620 rimP 1231403..1231927 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  KCV10_RS05640 secG 1232565..1232894 (-) 330 WP_002156913.1 preprotein translocase subunit SecG -
  KCV10_RS05645 tpiA 1232907..1233701 (-) 795 WP_049064232.1 triose-phosphate isomerase -
  KCV10_RS05650 pilB 1233991..1235703 (+) 1713 WP_151682978.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KCV10_RS05655 pilC 1235731..1236957 (+) 1227 WP_019456773.1 type II secretion system F family protein Machinery gene
  KCV10_RS18675 pilD 1236957..1237817 (+) 861 WP_151760695.1 prepilin peptidase Machinery gene
  KCV10_RS05665 coaE 1237819..1238415 (+) 597 WP_151682980.1 dephospho-CoA kinase -
  KCV10_RS05670 - 1238412..1239326 (-) 915 WP_151682981.1 DMT family transporter -
  KCV10_RS05675 rlmB 1239362..1240111 (-) 750 WP_151682982.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KCV10_RS05680 - 1240214..1240540 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  KCV10_RS05685 - 1240617..1241054 (-) 438 Protein_1113 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45040.62 Da        Isoelectric Point: 10.0201

>NTDB_id=558438 KCV10_RS05655 WP_019456773.1 1235731..1236957(+) (pilC) [Acinetobacter seifertii strain S63-3]
MAVKKAQMMPTFAYEGVDRKGLKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEIEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQEYWFIMIIAFGAIII
AFLEAKKRSKKFRDGLDKLALKLPIFGNLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTAMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=558438 KCV10_RS05655 WP_019456773.1 1235731..1236957(+) (pilC) [Acinetobacter seifertii strain S63-3]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCTTAAAAATTAAGGGGGA
ACTTCCAGCTAAAAATATGGCTTTAGCTAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACCATACGTGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTTGATATTACTATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAGAAAATCCAGCCATGCGTGAGGT
AGTACTTGGTATTAAAGGTGAAATTGAGGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAGTATCCGCAACATTTTGACA
ATTTATTTTGTTCACTTGTGGAATCTGGAGAACAATCAGGCGCTCTCGAAACCATGCTAGATCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCAATGAAATATCCGGCCACGGTTATTGTAGTAGCGATTGTGGT
GACTATTATTTTGATGGTTAAAGTCGTACCCGTTTTCCAAGATCTGTTTTCTTCATTTGGAGCAGAATTACCAGCATTCA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAAGAATATTGGTTCATCATGATTATTGCATTTGGCGCAATTATTATA
GCCTTTTTAGAAGCTAAAAAACGTAGTAAAAAGTTTAGAGATGGCTTAGATAAACTGGCGCTCAAATTACCTATTTTTGG
GAACTTGGTCTATAAAGCAATTATTGCCCGTTATAGCCGGACACTTGCCACAACATTTGCAGCAGGTGTTCCGCTCATTG
ATGCACTTGAGTCGACTGCTGGTGCAACCAATAATGTCATCTATGAAAAAGCCGTTATGAAAATTCGTGAAGATGTAGCA
ACAGGACAACAACTTCAGTTTGCCATGCGTGTATCTAACCGTTTTCCTTCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTTGATAAAGTGGCTACCTATTATGAAAATGAAGTTGATAATGCAGTTGATGGTT
TAACTGCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTGGTAGGCGGTCTAGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGTTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PQF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

84.804

100

0.848
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria meningitidis 44/76-A

46.867

97.794

0.458
  pilG Neisseria gonorrhoeae MS11

46.867

97.794

0.458
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.447

98.775

0.4
  pilC Thermus thermophilus HB27

37.157

98.284

0.365