Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KCV10_RS18675 Genome accession   NZ_CP073243
Coordinates   1236957..1237817 (+) Length   286 a.a.
NCBI ID   WP_151760695.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1231957..1242817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS05640 secG 1232565..1232894 (-) 330 WP_002156913.1 preprotein translocase subunit SecG -
  KCV10_RS05645 tpiA 1232907..1233701 (-) 795 WP_049064232.1 triose-phosphate isomerase -
  KCV10_RS05650 pilB 1233991..1235703 (+) 1713 WP_151682978.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KCV10_RS05655 pilC 1235731..1236957 (+) 1227 WP_019456773.1 type II secretion system F family protein Machinery gene
  KCV10_RS18675 pilD 1236957..1237817 (+) 861 WP_151760695.1 prepilin peptidase Machinery gene
  KCV10_RS05665 coaE 1237819..1238415 (+) 597 WP_151682980.1 dephospho-CoA kinase -
  KCV10_RS05670 - 1238412..1239326 (-) 915 WP_151682981.1 DMT family transporter -
  KCV10_RS05675 rlmB 1239362..1240111 (-) 750 WP_151682982.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KCV10_RS05680 - 1240214..1240540 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  KCV10_RS05685 - 1240617..1241054 (-) 438 Protein_1113 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32185.60 Da        Isoelectric Point: 7.1038

>NTDB_id=558464 KCV10_RS18675 WP_151760695.1 1236957..1237817(+) (pilD) [Acinetobacter seifertii strain S63-3]
MQEIIAYFIQNLTALYIAVAFVSLCIGSFLNVVIYRTPKMMEQDWQLECQMLLNPEQPIIDHEKLTLSKPASSCPNCHQP
IRWYQNIPIVSWLMLRGKCGYCQHPISIRYPAIELLTMLCSVVVVMVFGPTIQMLWGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPSSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIATAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=558464 KCV10_RS18675 WP_151760695.1 1236957..1237817(+) (pilD) [Acinetobacter seifertii strain S63-3]
ATGCAAGAAATCATTGCTTATTTTATTCAAAACTTAACTGCTCTTTATATTGCAGTTGCATTCGTGAGCCTATGTATTGG
TAGCTTTCTAAATGTAGTGATTTATCGTACTCCAAAGATGATGGAGCAAGATTGGCAATTAGAATGTCAAATGCTCCTAA
ATCCAGAGCAACCCATTATTGACCATGAAAAACTAACATTAAGCAAACCTGCTTCATCATGTCCAAATTGCCACCAACCG
ATCCGTTGGTATCAAAATATTCCTATCGTAAGCTGGTTGATGCTAAGAGGAAAATGTGGTTATTGCCAACATCCTATCAG
CATTCGTTATCCAGCAATTGAACTACTCACCATGCTATGCTCTGTGGTAGTGGTTATGGTATTTGGCCCAACTATACAAA
TGCTTTGGGGACTCGTTCTTACTTGGGTACTGATTGCCCTTACCTTTATTGATTTCGATACGCAGTTATTACCTGATCGC
TTTACCCTACCTTTGGCTGCACTCGGCTTAGGAATTAACACCTTTAATATTTACACCTCACCTAGCTCAGCCATTTGGGG
ATATTTAATTGGTTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACTGGCAAAGAAGGTATGGGCTACG
GTGACTTTAAATTGCTTGCCGCATTAGGCGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA
TTGGGTGCAATTATTGGCATCATTTTATTAAAGTTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAC
TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAGATTTATTTAGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

95.455

100

0.955
  pilD Acinetobacter baumannii D1279779

94.755

100

0.948
  pilD Vibrio cholerae strain A1552

53.759

93.007

0.5
  pilD Vibrio campbellii strain DS40M4

53.03

92.308

0.49
  pilD Neisseria gonorrhoeae MS11

48.485

92.308

0.448