Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   KCV09_RS13310 Genome accession   NZ_CP073241
Coordinates   2899694..2901790 (+) Length   698 a.a.
NCBI ID   WP_208476756.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2894694..2906790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13290 comM 2896684..2897754 (+) 1071 WP_004934220.1 pilus assembly protein PilM Machinery gene
  KCV09_RS13295 comN 2897741..2898379 (+) 639 WP_212515777.1 PilN domain-containing protein Machinery gene
  KCV09_RS13300 comO 2898376..2899110 (+) 735 WP_004944972.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCV09_RS13305 comL 2899110..2899634 (+) 525 WP_004934225.1 pilus assembly protein PilP Machinery gene
  KCV09_RS13310 comQ 2899694..2901790 (+) 2097 WP_208476756.1 type IV pilus secretin PilQ family protein Machinery gene
  KCV09_RS13315 aroK 2901827..2902369 (+) 543 WP_004944978.1 shikimate kinase AroK -
  KCV09_RS13320 aroB 2902393..2903481 (+) 1089 WP_212515265.1 3-dehydroquinate synthase -
  KCV09_RS13325 - 2903491..2904339 (+) 849 WP_004944984.1 hypothetical protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 75401.82 Da        Isoelectric Point: 8.8498

>NTDB_id=558414 KCV09_RS13310 WP_208476756.1 2899694..2901790(+) (comQ) [Acinetobacter soli strain M3-1-68]
MKQVIRQFTMASVTYAVMQVASAQVAITNVVPMTIPGQGTEVRIMFNGLPPQPQSYQLEQPSRLILDFDQATQKLAKRNI
ALTSNEASGIEVSADEKRARVTVNLKNSGAFTTRVEGNVFILKINNLASAATPLAAPAPKNQLSIGNIGFQKGAQGEGQV
VIDLQGSTTPVDVQQEGSKVVVRFPGIKIPTHLARRLNTTEFATPVASIDAFNNGSNGVVSIQSTGSYEYMAYQAENKLT
ISLKRPQDNVRLNSKNNQNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLRLKDVPWDQALDIILKTKN
LDKRRNGNVIWIAPVTEMIKSEEDEAKAIAQSTKLSPLQTEFIQLKYAKAVDIEKLITQGRNSGTTSTATTGGATVEPLG
DSVGTLLSPRGTISFDPRTNTLILNDTAQKIDQIRRMIDLLDIPVKQVMIEARIVRASTSFSKEMGVKWGVLSTGNDLQV
TGKNSTLWNLRNGDTINNNLSVDLGVSTAGASSISFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQKAKVATG
VEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIANDSINSYAQNGEAILNKNAINTNVLVNNGETVV
LGGVFEQTTSNAVTKVPFLGDLPYVGHLFKKTAKSEAKNELLIFVTPRIVNDTIVGNH

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=558414 KCV09_RS13310 WP_208476756.1 2899694..2901790(+) (comQ) [Acinetobacter soli strain M3-1-68]
ATGAAACAGGTAATTCGTCAATTTACGATGGCAAGTGTGACCTATGCCGTGATGCAAGTTGCAAGTGCGCAGGTCGCCAT
TACCAATGTCGTCCCGATGACGATTCCGGGACAAGGGACCGAAGTGCGGATTATGTTTAATGGACTGCCGCCACAACCTC
AGTCGTATCAACTTGAGCAGCCATCTCGTCTGATTCTGGATTTCGATCAAGCCACGCAAAAACTGGCCAAACGCAATATT
GCGCTCACCAGCAATGAAGCCTCGGGAATTGAAGTCAGTGCAGATGAAAAACGCGCCCGTGTCACGGTGAATCTTAAAAA
TTCAGGTGCGTTTACCACACGTGTAGAAGGCAATGTCTTCATTCTTAAAATTAATAATCTGGCCTCTGCCGCGACTCCAC
TTGCCGCTCCAGCCCCAAAAAACCAGCTTTCTATTGGAAATATTGGATTTCAAAAGGGAGCACAAGGTGAAGGGCAGGTG
GTGATTGATCTGCAAGGCAGTACCACGCCTGTCGATGTGCAGCAAGAAGGCAGCAAGGTGGTGGTGCGTTTTCCTGGCAT
CAAAATTCCGACGCATCTGGCGCGCCGCCTGAATACCACCGAGTTTGCAACGCCTGTGGCATCGATTGATGCATTCAATA
ATGGCAGCAACGGTGTGGTCTCGATTCAGTCGACGGGGAGTTATGAATACATGGCGTATCAGGCCGAAAATAAACTCACC
ATCAGTTTAAAGCGTCCACAAGATAATGTCAGACTAAACTCAAAAAACAACCAAAACTATACGGGTAAGAAGATCTCACT
GGATTTTCAAGACATTGAAGTACGCCGCGTATTACAGTTACTGGCCGATTTTACCAATATCAATATGGTGACCGCAGATT
CTGTACAAGGCAATATTACCTTGCGCCTTAAAGACGTGCCGTGGGATCAGGCGCTGGATATTATTTTAAAAACCAAAAAT
CTGGACAAGCGCCGTAATGGGAATGTGATCTGGATAGCGCCTGTCACCGAAATGATCAAGTCTGAAGAAGATGAAGCCAA
AGCGATTGCACAAAGTACCAAGCTCTCGCCGTTACAAACCGAGTTTATTCAGCTTAAATATGCCAAAGCGGTAGATATTG
AAAAATTGATTACTCAAGGTCGAAACAGCGGTACTACCAGTACTGCTACGACTGGTGGTGCGACGGTGGAGCCTTTGGGC
GATAGCGTTGGCACTTTGTTAAGCCCGCGTGGCACGATTTCTTTTGATCCGCGTACCAACACTCTTATTTTAAATGACAC
TGCGCAAAAGATTGACCAGATCCGACGCATGATTGATTTGCTGGATATTCCGGTGAAACAAGTCATGATTGAAGCACGGA
TTGTGCGTGCATCGACCTCGTTTAGTAAAGAAATGGGAGTGAAATGGGGCGTCTTGTCGACAGGCAATGATTTACAGGTC
ACAGGTAAAAATTCAACCTTATGGAACTTGCGTAATGGCGACACCATTAACAATAACTTAAGTGTTGACTTAGGGGTATC
GACAGCAGGCGCCAGCAGTATTTCATTTGGTTTAATCAGTTTGTCTGATTTTATGCTGGACTTGGAGCTGTCTGCCTTGC
AGGCTGACGGATACGGCGAAGTGATTTCAACACCGAAAGTGATGTCCGCCGATAAGCAAAAAGCCAAAGTAGCAACCGGT
GTGGAGGTGCCGTATCAGTCCACCACCAACTCGGCAGCAGGATCAACTGCCACAACCTCATTTAAAGAAGCATTGCTCAG
TCTGGAAGTCACACCCAACATTACCCCAGACGGTAAAATTTTGATGGAACTGAATATTGCCAATGACTCGATCAATAGTT
ATGCCCAAAACGGTGAGGCCATTTTAAATAAAAATGCGATCAATACCAATGTCTTGGTGAATAACGGTGAAACAGTTGTC
TTGGGTGGTGTATTCGAACAAACCACGTCTAATGCGGTGACTAAAGTGCCATTTTTAGGTGATTTGCCTTATGTGGGGCA
TTTATTTAAAAAGACCGCAAAAAGTGAAGCGAAAAATGAACTGCTAATTTTTGTGACACCTCGAATAGTTAATGACACTA
TTGTTGGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-114)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-447)

Bacterial type II and III secretion system protein (Secretin)

(532-690)

Secretin and TonB N terminus short domain (STN)

(291-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Acinetobacter baylyi ADP1

86.742

100

0.881
  pilQ Acinetobacter baumannii D1279779

69.559

100

0.723
  pilQ Acinetobacter baumannii strain A118

69.559

100

0.723
  pilQ Pseudomonas aeruginosa PAK

40.714

100

0.408
  pilQ Legionella pneumophila strain ERS1305867

38.462

98.711

0.38
  pilQ Legionella pneumophila strain Lp02

38.316

98.711

0.378