Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   KCV09_RS13300 Genome accession   NZ_CP073241
Coordinates   2898376..2899110 (+) Length   244 a.a.
NCBI ID   WP_004944972.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2893376..2904110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13285 ponA 2893986..2896517 (-) 2532 WP_212515264.1 penicillin-binding protein PBP1a -
  KCV09_RS13290 comM 2896684..2897754 (+) 1071 WP_004934220.1 pilus assembly protein PilM Machinery gene
  KCV09_RS13295 comN 2897741..2898379 (+) 639 WP_212515777.1 PilN domain-containing protein Machinery gene
  KCV09_RS13300 comO 2898376..2899110 (+) 735 WP_004944972.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCV09_RS13305 comL 2899110..2899634 (+) 525 WP_004934225.1 pilus assembly protein PilP Machinery gene
  KCV09_RS13310 comQ 2899694..2901790 (+) 2097 WP_208476756.1 type IV pilus secretin PilQ family protein Machinery gene
  KCV09_RS13315 aroK 2901827..2902369 (+) 543 WP_004944978.1 shikimate kinase AroK -
  KCV09_RS13320 aroB 2902393..2903481 (+) 1089 WP_212515265.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27566.44 Da        Isoelectric Point: 6.2644

>NTDB_id=558412 KCV09_RS13300 WP_004944972.1 2898376..2899110(+) (comO) [Acinetobacter soli strain M3-1-68]
MKRDPVDHTAPEQAPVQKKRMTVDKFFQQFNTLDMSNYGSWPKSVKITCWIFIFFLVVALGYFVMIRPQLDTIQTARAQE
QNLLNEFKEKESKLRNLQQYQRQLVEMQASFNQQLTQLPKESEIPGLVEDINMTGVNSGLKFKNIRLENEVKQEIFVEQP
ISIEATGDYHAFGAFVSGISALPRIVTMHDFVIEAKPAKETSDIPQVDYSVKAKTYRYIGVDEQNAASSVQPSAAPAAAQ
GGTP

Nucleotide


Download         Length: 735 bp        

>NTDB_id=558412 KCV09_RS13300 WP_004944972.1 2898376..2899110(+) (comO) [Acinetobacter soli strain M3-1-68]
ATGAAACGAGATCCAGTCGATCACACGGCACCTGAGCAGGCACCTGTGCAGAAAAAACGCATGACGGTGGATAAGTTTTT
TCAGCAGTTTAATACGCTCGACATGAGCAATTACGGGAGTTGGCCCAAATCGGTCAAAATCACCTGCTGGATATTTATTT
TTTTCTTAGTGGTGGCGCTTGGTTATTTTGTCATGATTCGTCCGCAGTTAGACACCATACAGACCGCGCGTGCGCAAGAA
CAAAACCTTCTGAATGAGTTTAAAGAAAAAGAATCCAAACTACGCAATCTACAGCAGTATCAGCGTCAATTGGTCGAAAT
GCAGGCCAGCTTTAATCAGCAGCTGACGCAACTTCCAAAGGAAAGTGAGATTCCGGGCTTGGTAGAAGACATCAACATGA
CGGGTGTAAACTCGGGTTTGAAATTTAAAAATATTCGGCTTGAAAATGAGGTCAAACAAGAAATTTTTGTAGAGCAGCCA
ATTTCGATTGAAGCCACGGGTGACTATCATGCTTTTGGTGCCTTCGTCAGTGGTATTTCGGCCTTGCCGCGTATCGTGAC
CATGCATGATTTTGTCATTGAAGCAAAACCTGCCAAAGAAACCTCGGATATTCCGCAGGTCGATTACAGCGTCAAGGCGA
AAACATATCGTTATATCGGTGTAGACGAGCAAAACGCTGCCTCGTCGGTTCAGCCATCTGCCGCACCCGCAGCAGCACAA
GGGGGGACACCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

81.224

100

0.816
  pilO Acinetobacter baumannii D1279779

70

98.361

0.689