Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   KCV09_RS13295 Genome accession   NZ_CP073241
Coordinates   2897741..2898379 (+) Length   212 a.a.
NCBI ID   WP_212515777.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2892741..2903379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13280 - 2893148..2893969 (+) 822 WP_212515263.1 putative RNA methyltransferase -
  KCV09_RS13285 ponA 2893986..2896517 (-) 2532 WP_212515264.1 penicillin-binding protein PBP1a -
  KCV09_RS13290 comM 2896684..2897754 (+) 1071 WP_004934220.1 pilus assembly protein PilM Machinery gene
  KCV09_RS13295 comN 2897741..2898379 (+) 639 WP_212515777.1 PilN domain-containing protein Machinery gene
  KCV09_RS13300 comO 2898376..2899110 (+) 735 WP_004944972.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCV09_RS13305 comL 2899110..2899634 (+) 525 WP_004934225.1 pilus assembly protein PilP Machinery gene
  KCV09_RS13310 comQ 2899694..2901790 (+) 2097 WP_208476756.1 type IV pilus secretin PilQ family protein Machinery gene
  KCV09_RS13315 aroK 2901827..2902369 (+) 543 WP_004944978.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23663.17 Da        Isoelectric Point: 9.3362

>NTDB_id=558411 KCV09_RS13295 WP_212515777.1 2897741..2898379(+) (comN) [Acinetobacter soli strain M3-1-68]
MTRINLLPWRDKLREKRKKEFILLSGLVAILGCAAVALGWTYFNFKLNDQEQANQLLITTNQGLDHQLKALDGLQQQRDA
IVERMKLIQGLQSQRPVAVRLIDEIVRVTPNNMYLTKFTRTGDKFTLEGRAESPNTVAELLRNLEASPWYRNAFMNSFLA
VDDTKEKAPTSVVPRPEEAYGSFVVSVDLGEIGVAYAPPTTTATATNAGAKP

Nucleotide


Download         Length: 639 bp        

>NTDB_id=558411 KCV09_RS13295 WP_212515777.1 2897741..2898379(+) (comN) [Acinetobacter soli strain M3-1-68]
ATGACACGCATTAACCTCCTTCCATGGCGCGATAAACTGCGAGAAAAGCGTAAAAAAGAATTTATTTTACTCAGTGGTTT
GGTGGCAATACTCGGATGCGCTGCCGTTGCATTGGGCTGGACGTATTTTAATTTCAAGCTTAATGATCAAGAGCAGGCCA
ATCAGTTACTTATTACTACCAATCAAGGCTTGGACCATCAACTCAAAGCACTCGATGGTTTACAGCAGCAGCGAGATGCG
ATTGTAGAACGAATGAAACTGATTCAGGGCTTGCAATCGCAGCGTCCTGTGGCAGTTCGCCTCATTGATGAAATTGTTCG
GGTTACACCAAACAATATGTATCTGACCAAATTTACCCGGACTGGCGATAAATTCACGCTAGAAGGCCGAGCCGAAAGCC
CGAATACCGTAGCCGAATTATTACGCAACCTTGAGGCATCGCCTTGGTATCGTAATGCCTTTATGAATTCGTTTCTGGCG
GTCGACGATACCAAAGAGAAGGCGCCAACGTCTGTTGTGCCAAGACCTGAAGAAGCATACGGCAGTTTTGTGGTCAGTGT
CGATTTGGGTGAAATTGGTGTGGCCTATGCGCCACCAACCACCACTGCAACAGCAACCAATGCGGGGGCCAAGCCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

77.358

100

0.774
  pilN Acinetobacter baumannii D1279779

69.34

100

0.693