Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KCV09_RS13305 Genome accession   NZ_CP073241
Coordinates   2899110..2899634 (+) Length   174 a.a.
NCBI ID   WP_004934225.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2894110..2904634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS13290 comM 2896684..2897754 (+) 1071 WP_004934220.1 pilus assembly protein PilM Machinery gene
  KCV09_RS13295 comN 2897741..2898379 (+) 639 WP_212515777.1 PilN domain-containing protein Machinery gene
  KCV09_RS13300 comO 2898376..2899110 (+) 735 WP_004944972.1 type 4a pilus biogenesis protein PilO Machinery gene
  KCV09_RS13305 comL 2899110..2899634 (+) 525 WP_004934225.1 pilus assembly protein PilP Machinery gene
  KCV09_RS13310 comQ 2899694..2901790 (+) 2097 WP_208476756.1 type IV pilus secretin PilQ family protein Machinery gene
  KCV09_RS13315 aroK 2901827..2902369 (+) 543 WP_004944978.1 shikimate kinase AroK -
  KCV09_RS13320 aroB 2902393..2903481 (+) 1089 WP_212515265.1 3-dehydroquinate synthase -
  KCV09_RS13325 - 2903491..2904339 (+) 849 WP_004944984.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19215.58 Da        Isoelectric Point: 9.0323

>NTDB_id=558413 KCV09_RS13305 WP_004934225.1 2899110..2899634(+) (comL) [Acinetobacter soli strain M3-1-68]
MIRQLLCLSVVVLGLAGCDSRIDSVQQQMAAIRSQPPLPIEPAPVFMPVPPYLYSANQLRNPFLPNSIAAELKVMSGKRV
YPNLSRPKQPLESYALESLNMKGSMRRINGQILALIQTPDGEIERVQIGNYMGLNEGRIVAISPTQIDLMEIVPDGRDGF
IERPRSLVLIGPKP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=558413 KCV09_RS13305 WP_004934225.1 2899110..2899634(+) (comL) [Acinetobacter soli strain M3-1-68]
ATGATACGTCAACTTCTGTGCTTGAGTGTGGTGGTGCTGGGGCTTGCGGGTTGTGATTCACGCATTGACAGTGTGCAGCA
GCAAATGGCCGCTATTCGAAGTCAGCCACCGTTACCGATTGAGCCTGCGCCTGTATTTATGCCTGTTCCGCCCTACCTTT
ATTCTGCCAATCAGTTACGCAATCCATTCTTGCCGAACTCGATTGCCGCAGAACTCAAGGTGATGTCTGGAAAACGCGTT
TACCCAAATCTATCCAGACCCAAACAGCCACTTGAAAGTTATGCGCTTGAATCATTAAACATGAAAGGCAGTATGCGCCG
CATCAATGGCCAAATTCTGGCATTAATTCAAACGCCTGATGGTGAAATTGAGCGTGTACAAATTGGCAATTATATGGGGC
TGAATGAAGGGCGGATTGTAGCCATCTCACCCACACAAATTGATTTAATGGAAATTGTGCCAGATGGACGTGATGGATTT
ATTGAACGGCCACGATCTTTGGTTTTAATTGGACCGAAGCCCTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Acinetobacter baylyi ADP1

79.31

100

0.793
  pilP Acinetobacter baumannii D1279779

70.52

99.425

0.701