Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KCV09_RS10190 Genome accession   NZ_CP073241
Coordinates   2214451..2215677 (+) Length   408 a.a.
NCBI ID   WP_004943990.1    Uniprot ID   A0A0M1I3B5
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209451..2220677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS10155 rimP 2209711..2210235 (-) 525 WP_004932478.1 ribosome maturation factor RimP -
  KCV09_RS10175 secG 2211312..2211641 (-) 330 WP_004932477.1 preprotein translocase subunit SecG -
  KCV09_RS10180 tpiA 2211651..2212448 (-) 798 WP_004932474.1 triose-phosphate isomerase -
  KCV09_RS10185 pilB 2212712..2214427 (+) 1716 WP_119689887.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KCV09_RS10190 pilC 2214451..2215677 (+) 1227 WP_004943990.1 type II secretion system F family protein Machinery gene
  KCV09_RS10195 pilD 2215677..2216537 (+) 861 WP_151814992.1 A24 family peptidase Machinery gene
  KCV09_RS10200 coaE 2216540..2217139 (+) 600 WP_151814991.1 dephospho-CoA kinase -
  KCV09_RS10205 - 2217115..2218044 (-) 930 WP_025095298.1 DMT family transporter -
  KCV09_RS10210 rlmB 2218082..2218828 (-) 747 WP_004943999.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KCV09_RS10215 - 2218930..2219256 (-) 327 WP_004932453.1 pyrimidine/purine nucleoside phosphorylase -
  KCV09_RS10220 - 2219341..2220645 (-) 1305 WP_151814990.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45195.57 Da        Isoelectric Point: 10.0857

>NTDB_id=558398 KCV09_RS10190 WP_004943990.1 2214451..2215677(+) (pilC) [Acinetobacter soli strain M3-1-68]
MAAKKVQTVPTFAYEGVDRKGIKLKGELSARNMALAKVTLRKQGITIRTIREKRRNLLEGLFKKRVKPLDITIFTRQLAT
MMKAGVPLVQAFEIVAEGLDNPAMREVVLGLKTDVEGGNTFAGALRKYPQHFDNLFCSLIESGEQSGSLETMLERVAVYK
EKSEVLKQKIKKAMKYPAMVIVVAIVVTIILMVKVVPVFKDLFTSFGADLPAFTQMVVNMSNWMQSYWILLIFIIGAVIA
GFLEARKRSKTFRDRLDQLVLRLPIVGDLVYKAIIARYSRTLATTFAAGVPLIDALASTAGATNNSIYERAVLKIRDDVS
TGQQLHFAMRVSNRFPTMAIQMVAIGEESGALDEMLDKVANYYESEVDHAVDGLTSMMEPLIMAILGILVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=558398 KCV09_RS10190 WP_004943990.1 2214451..2215677(+) (pilC) [Acinetobacter soli strain M3-1-68]
ATGGCAGCAAAAAAAGTACAAACAGTGCCCACTTTCGCGTATGAAGGTGTTGATCGTAAGGGGATCAAACTTAAAGGGGA
GCTTTCTGCCCGTAATATGGCATTGGCCAAAGTCACCTTGCGTAAACAAGGCATTACCATTCGAACCATTCGTGAAAAGC
GCCGCAACCTGCTTGAAGGACTATTTAAGAAAAGAGTTAAACCGCTCGATATCACGATTTTTACTCGCCAGTTGGCAACC
ATGATGAAAGCAGGTGTGCCGCTGGTTCAGGCCTTTGAAATTGTCGCTGAAGGCTTGGATAATCCTGCCATGCGCGAGGT
GGTACTCGGACTCAAAACAGATGTCGAAGGAGGCAATACTTTTGCTGGTGCGCTGCGTAAATATCCGCAGCACTTCGACA
ATCTGTTTTGCTCCCTAATTGAGTCGGGTGAACAATCGGGTTCGCTTGAAACCATGCTAGAGCGAGTTGCGGTATATAAA
GAAAAAAGTGAAGTATTGAAGCAAAAAATCAAAAAAGCCATGAAGTATCCGGCTATGGTGATTGTGGTCGCGATCGTGGT
GACCATCATTTTGATGGTGAAAGTGGTTCCGGTATTTAAAGATTTATTTACCTCATTTGGCGCAGACTTGCCAGCCTTTA
CCCAGATGGTGGTGAACATGTCCAACTGGATGCAGTCTTACTGGATATTGCTCATTTTCATTATCGGTGCGGTGATTGCT
GGCTTTTTAGAGGCACGTAAACGCAGCAAAACTTTTCGTGATCGTCTAGATCAACTCGTGCTTCGTTTGCCGATTGTGGG
TGATCTGGTCTATAAAGCCATTATTGCCCGTTATAGCCGTACCCTTGCCACCACTTTTGCAGCGGGTGTTCCGCTGATTG
ATGCGCTGGCATCTACTGCAGGTGCAACCAATAACAGTATTTATGAACGTGCTGTGCTTAAAATTCGTGACGATGTGTCT
ACAGGCCAGCAGCTTCATTTTGCCATGCGCGTGTCGAATCGTTTCCCCACGATGGCCATTCAAATGGTGGCCATTGGTGA
AGAATCCGGGGCACTAGATGAAATGCTGGACAAAGTTGCGAATTATTATGAAAGTGAAGTCGATCACGCAGTAGACGGTC
TTACATCGATGATGGAACCCTTGATTATGGCAATTCTGGGCATTTTAGTGGGTGGTCTGGTGATTGCGATGTATCTTCCG
ATTTTCCAAATGGGTTCAGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1I3B5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

91.667

100

0.917
  pilC Acinetobacter baumannii D1279779

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.413

100

0.596
  pilC Legionella pneumophila strain ERS1305867

52.764

97.549

0.515
  pilG Neisseria gonorrhoeae MS11

45.865

97.794

0.449
  pilG Neisseria meningitidis 44/76-A

45.614

97.794

0.446
  pilC Vibrio cholerae strain A1552

43.243

99.755

0.431
  pilC Vibrio campbellii strain DS40M4

43.5

98.039

0.426
  pilC Thermus thermophilus HB27

37.192

99.51

0.37