Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KCV09_RS10195 Genome accession   NZ_CP073241
Coordinates   2215677..2216537 (+) Length   286 a.a.
NCBI ID   WP_151814992.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2210677..2221537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS10175 secG 2211312..2211641 (-) 330 WP_004932477.1 preprotein translocase subunit SecG -
  KCV09_RS10180 tpiA 2211651..2212448 (-) 798 WP_004932474.1 triose-phosphate isomerase -
  KCV09_RS10185 pilB 2212712..2214427 (+) 1716 WP_119689887.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KCV09_RS10190 pilC 2214451..2215677 (+) 1227 WP_004943990.1 type II secretion system F family protein Machinery gene
  KCV09_RS10195 pilD 2215677..2216537 (+) 861 WP_151814992.1 A24 family peptidase Machinery gene
  KCV09_RS10200 coaE 2216540..2217139 (+) 600 WP_151814991.1 dephospho-CoA kinase -
  KCV09_RS10205 - 2217115..2218044 (-) 930 WP_025095298.1 DMT family transporter -
  KCV09_RS10210 rlmB 2218082..2218828 (-) 747 WP_004943999.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KCV09_RS10215 - 2218930..2219256 (-) 327 WP_004932453.1 pyrimidine/purine nucleoside phosphorylase -
  KCV09_RS10220 - 2219341..2220645 (-) 1305 WP_151814990.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31966.27 Da        Isoelectric Point: 7.9064

>NTDB_id=558399 KCV09_RS10195 WP_151814992.1 2215677..2216537(+) (pilD) [Acinetobacter soli strain M3-1-68]
MSDIFSYFITNSTALYLAIGILSLCIGSFLNVVIYRTPKMMEQEWTQECQLLLHPEQAVIETEKLSLSSPASSCPHCRAP
IRWYHNIPVLSWLALRGKCHACDHPITIRYPAIELLTLLTSLTVLMVLGPTLKMLFGLVLTWMLIALTFIDFDTQLLPDR
YTLTLAGLGLAINSAHVYVSPNEAIWGYVIGFLCLWVVYYLFKLLTKKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSF
VGAIIGVVLLRIRKQNQPFAFGPFIAIAGWIAFLWGDAIMRVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=558399 KCV09_RS10195 WP_151814992.1 2215677..2216537(+) (pilD) [Acinetobacter soli strain M3-1-68]
ATGTCTGATATCTTCTCGTATTTTATTACCAATTCGACTGCGCTTTATCTCGCGATTGGTATCTTAAGCCTGTGTATTGG
CAGCTTTTTAAATGTGGTGATCTACCGCACACCCAAAATGATGGAGCAGGAATGGACACAAGAATGCCAGTTGTTGCTGC
ATCCAGAACAGGCCGTGATTGAAACCGAAAAGCTCAGTCTAAGTTCACCTGCATCTTCATGTCCGCATTGTCGTGCGCCA
ATTCGCTGGTATCACAATATTCCAGTGCTAAGCTGGCTGGCTTTACGCGGGAAATGTCATGCGTGTGACCACCCGATTAC
AATCCGCTACCCCGCCATTGAATTGCTTACGCTGTTAACCTCACTGACCGTGCTGATGGTTTTGGGGCCAACGCTTAAAA
TGTTGTTTGGGCTAGTGCTCACTTGGATGTTAATTGCGCTGACCTTTATCGACTTTGATACTCAGCTTTTACCAGATCGC
TATACCCTCACCCTTGCAGGATTAGGCTTGGCCATCAATAGCGCGCATGTGTATGTTTCTCCCAATGAGGCCATCTGGGG
CTATGTCATCGGCTTTTTGTGCTTATGGGTGGTGTATTACCTGTTTAAACTGCTCACCAAAAAAGAAGGCATGGGATACG
GCGATTTCAAACTACTGGCAGCGCTGGGAGCTTGGATGGGGCCGCTGATGCTGCCGCTGATTGTGCTGTTATCGTCGTTT
GTGGGGGCGATTATTGGTGTTGTACTTTTGCGTATTCGCAAGCAAAATCAGCCTTTTGCATTTGGTCCCTTTATTGCGAT
TGCGGGCTGGATTGCCTTTTTATGGGGAGATGCAATTATGCGGGTATATCTAGGAGGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

76.224

100

0.762
  pilD Acinetobacter nosocomialis M2

76.224

100

0.762
  pilD Vibrio cholerae strain A1552

54.275

94.056

0.51
  pilD Vibrio campbellii strain DS40M4

52.809

93.357

0.493
  pilD Neisseria gonorrhoeae MS11

46.947

91.608

0.43