Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   L1704_RS12160 Genome accession   NZ_CP091107
Coordinates   2320421..2321014 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis subsp. lactis strain UC109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2315421..2326014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1704_RS12130 (L1704_12130) - 2315628..2315792 (-) 165 WP_003131988.1 hypothetical protein -
  L1704_RS12135 (L1704_12135) - 2315897..2316514 (-) 618 WP_058225815.1 ABC transporter ATP-binding protein -
  L1704_RS12140 (L1704_12140) - 2316511..2317695 (-) 1185 WP_014570851.1 ABC transporter permease -
  L1704_RS12145 (L1704_12145) - 2317762..2318052 (-) 291 WP_003131992.1 hypothetical protein -
  L1704_RS12150 (L1704_12150) - 2318272..2319156 (-) 885 WP_058225816.1 XRE/MutR family transcriptional regulator -
  L1704_RS12155 (L1704_12155) ruvB 2319293..2320294 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  L1704_RS12160 (L1704_12160) ruvA 2320421..2321014 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  L1704_RS12165 (L1704_12165) hexB 2321127..2323097 (-) 1971 WP_014570854.1 DNA mismatch repair endonuclease MutL Machinery gene
  L1704_RS12170 (L1704_12170) - 2323226..2323921 (-) 696 WP_058225817.1 hypothetical protein -
  L1704_RS12175 (L1704_12175) - 2324000..2324890 (-) 891 WP_081196253.1 IS982-like element ISLll1 family transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=558172 L1704_RS12160 WP_003131995.1 2320421..2321014(-) (ruvA) [Lactococcus lactis subsp. lactis strain UC109]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=558172 L1704_RS12160 WP_003131995.1 2320421..2321014(-) (ruvA) [Lactococcus lactis subsp. lactis strain UC109]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCAGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462