Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | LZ753_RS10300 | Genome accession | NZ_CP090514 |
| Coordinates | 2273887..2274327 (+) | Length | 146 a.a. |
| NCBI ID | WP_234502188.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Riv13 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2268887..2279327
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ753_RS10275 (LZ753_10275) | coaE | 2268984..2269607 (-) | 624 | WP_004090385.1 | dephospho-CoA kinase | - |
| LZ753_RS10280 (LZ753_10280) | pilD | 2269619..2270482 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| LZ753_RS10285 (LZ753_10285) | pilC | 2270489..2271691 (-) | 1203 | WP_011098309.1 | type II secretion system F family protein | Machinery gene |
| LZ753_RS10290 (LZ753_10290) | pilA | 2272132..2272578 (+) | 447 | WP_004090380.1 | pilin | Machinery gene |
| LZ753_RS10295 (LZ753_10295) | - | 2272824..2273033 (-) | 210 | WP_004090377.1 | hypothetical protein | - |
| LZ753_RS10300 (LZ753_10300) | pilA/pilAI | 2273887..2274327 (+) | 441 | WP_234502188.1 | pilin | Machinery gene |
| LZ753_RS10305 (LZ753_10305) | pilB | 2275170..2276903 (+) | 1734 | WP_004090374.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LZ753_RS10310 (LZ753_10310) | - | 2276997..2278409 (-) | 1413 | WP_004090373.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15021.26 Da Isoelectric Point: 7.5930
>NTDB_id=554741 LZ753_RS10300 WP_234502188.1 2273887..2274327(+) (pilA/pilAI) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVAAALAEITPGRTQAEIRMADGQASNTPNDIGLRSPTTRCSL
VVVDITTTGGAIVCTMIGNGQVNNQTITLTRIADNNAGQGGVNTGGNWTCTTTAPAALTPAGCTGT
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVAAALAEITPGRTQAEIRMADGQASNTPNDIGLRSPTTRCSL
VVVDITTTGGAIVCTMIGNGQVNNQTITLTRIADNNAGQGGVNTGGNWTCTTTAPAALTPAGCTGT
Nucleotide
Download Length: 441 bp
>NTDB_id=554741 LZ753_RS10300 WP_234502188.1 2273887..2274327(+) (pilA/pilAI) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCGCAGCGGCACTAGCCGAGATCACACCGGGCCGAACACAAGCCG
AAATCCGTATGGCTGATGGACAGGCTTCAAACACTCCTAACGATATTGGACTACGCAGCCCGACCACTCGTTGCAGCCTC
GTTGTGGTGGACATCACAACTACTGGCGGCGCAATCGTATGTACGATGATTGGTAATGGTCAGGTCAACAATCAAACTAT
CACCTTGACCCGCATCGCTGATAACAACGCAGGCCAAGGTGGCGTCAATACTGGGGGGAACTGGACCTGCACCACAACCG
CGCCTGCAGCGTTAACTCCAGCAGGCTGCACTGGAACTTAA
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCGCAGCGGCACTAGCCGAGATCACACCGGGCCGAACACAAGCCG
AAATCCGTATGGCTGATGGACAGGCTTCAAACACTCCTAACGATATTGGACTACGCAGCCCGACCACTCGTTGCAGCCTC
GTTGTGGTGGACATCACAACTACTGGCGGCGCAATCGTATGTACGATGATTGGTAATGGTCAGGTCAACAATCAAACTAT
CACCTTGACCCGCATCGCTGATAACAACGCAGGCCAAGGTGGCGTCAATACTGGGGGGAACTGGACCTGCACCACAACCG
CGCCTGCAGCGTTAACTCCAGCAGGCTGCACTGGAACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
46.897 |
99.315 |
0.466 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.466 |
100 |
0.425 |
| pilA | Acinetobacter baumannii strain A118 |
41.892 |
100 |
0.425 |
| pilA | Pseudomonas aeruginosa PAK |
37.736 |
100 |
0.411 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.189 |
100 |
0.397 |
| pilA | Vibrio cholerae C6706 |
37.908 |
100 |
0.397 |
| pilA | Vibrio cholerae strain A1552 |
37.908 |
100 |
0.397 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.908 |
100 |
0.397 |
| pilA | Haemophilus influenzae 86-028NP |
37.671 |
100 |
0.377 |
| comP | Acinetobacter baylyi ADP1 |
33.758 |
100 |
0.363 |