Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J7T63_RS08950 Genome accession   NZ_CP072442
Coordinates   1713149..1713541 (-) Length   130 a.a.
NCBI ID   WP_011226610.1    Uniprot ID   A0A3G6K2H6
Organism   Streptococcus thermophilus strain S24726     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1711707..1712882 1713149..1713541 flank 267


Gene organization within MGE regions


Location: 1711707..1713541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T63_RS08945 (J7T63_08870) - 1711707..1712882 (-) 1176 WP_014608082.1 IS256-like element IS1191 family transposase -
  J7T63_RS08950 (J7T63_08875) ssbA 1713149..1713541 (-) 393 WP_011226610.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14773.70 Da        Isoelectric Point: 5.9275

>NTDB_id=553356 J7T63_RS08950 WP_011226610.1 1713149..1713541(-) (ssbA) [Streptococcus thermophilus strain S24726]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=553356 J7T63_RS08950 WP_011226610.1 1713149..1713541(-) (ssbA) [Streptococcus thermophilus strain S24726]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6K2H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.8
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.769
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.809

100

0.754
  ssbB/cilA Streptococcus mitis SK321

74.046

100

0.746
  ssbB/cilA Streptococcus pneumoniae R6

74.046

100

0.746
  ssbB/cilA Streptococcus pneumoniae Rx1

74.046

100

0.746
  ssbB/cilA Streptococcus pneumoniae D39

74.046

100

0.746
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.731
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

86.154

0.538
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

81.538

0.385
  ssb Latilactobacillus sakei subsp. sakei 23K

46.226

81.538

0.377